Construct: ORF TRCN0000488178

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020451.1_s317c1
DNA Barcode:
TTTGGGGCAGTGGTGCCCTACGGC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
FGFR2 (2263)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488178
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2263 FGFR2 fibroblast growth factor re... NM_022970.3 99.9% 100% 696A>G
2 human 2263 FGFR2 fibroblast growth factor re... XM_006717708.3 97.4% 97.5% 1_57del;753A>G;1341_1342insGTAACA
3 human 2263 FGFR2 fibroblast growth factor re... NM_000141.4 96.7% 96.7% (many diffs)
4 human 2263 FGFR2 fibroblast growth factor re... NM_001320658.2 96.5% 96.4% (many diffs)
5 human 2263 FGFR2 fibroblast growth factor re... NM_001144913.1 93.4% 93.4% 696A>G;2304_2305insGA;2307_2307delCins158
6 human 2263 FGFR2 fibroblast growth factor re... XM_006717710.4 93.4% 93.3% (many diffs)
7 human 2263 FGFR2 fibroblast growth factor re... XM_017015920.2 93.1% 93.1% (many diffs)
8 human 2263 FGFR2 fibroblast growth factor re... XM_017015921.2 90% 89.9% (many diffs)
9 human 2263 FGFR2 fibroblast growth factor re... XM_024447890.1 87.1% 87.1% 1_57del;164_165ins267;486A>G
10 human 2263 FGFR2 fibroblast growth factor re... XM_024447888.1 86.8% 86.9% (many diffs)
11 human 2263 FGFR2 fibroblast growth factor re... NM_001144914.1 86.2% 86.2% 696A>G;747_748ins339
12 human 2263 FGFR2 fibroblast growth factor re... NM_023029.2 86% 85.9% (many diffs)
13 human 2263 FGFR2 fibroblast growth factor re... NM_001144917.2 85.7% 85.7% 696A>G;939_940ins351
14 human 2263 FGFR2 fibroblast growth factor re... XM_024447887.1 84% 83.9% (many diffs)
15 human 2263 FGFR2 fibroblast growth factor re... XM_024447891.1 84% 83.9% 1_57del;166_167ins345;408A>G
16 human 2263 FGFR2 fibroblast growth factor re... XM_024447889.1 83.8% 83.7% (many diffs)
17 human 2263 FGFR2 fibroblast growth factor re... NM_001144916.1 82.8% 82.6% (many diffs)
18 human 2263 FGFR2 fibroblast growth factor re... NM_001144919.2 82.6% 82.6% (many diffs)
19 human 2263 FGFR2 fibroblast growth factor re... NM_001144918.2 82.6% 82.4% (many diffs)
20 human 2263 FGFR2 fibroblast growth factor re... NM_001144915.1 81.2% 79.9% (many diffs)
21 human 2263 FGFR2 fibroblast growth factor re... XM_017015924.2 81% 80.7% (many diffs)
22 human 2263 FGFR2 fibroblast growth factor re... XM_017015925.2 76.5% 76.1% (many diffs)
23 human 2263 FGFR2 fibroblast growth factor re... NM_001320654.1 68.3% 66.2% (many diffs)
24 human 2263 FGFR2 fibroblast growth factor re... XM_024447892.1 52.4% 52.4% 0_1ins1173
25 human 2263 FGFR2 fibroblast growth factor re... NR_073009.2 51.1% (many diffs)
26 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507349.2 89.5% 95.2% (many diffs)
27 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241673.2 89.5% 95.2% (many diffs)
28 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321975.1 89.5% 95.2% (many diffs)
29 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507350.3 89.2% 95% (many diffs)
30 mouse 14183 Fgfr2 fibroblast growth factor re... NM_010207.2 86.6% 92.1% (many diffs)
31 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241674.2 86.4% 91.9% (many diffs)
32 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507352.2 85.7% 90.9% (many diffs)
33 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321976.1 85.4% 90.7% (many diffs)
34 mouse 14183 Fgfr2 fibroblast growth factor re... XM_017321977.1 82.7% 87.6% (many diffs)
35 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507354.3 79.6% 85.3% (many diffs)
36 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241676.2 79.4% 85.1% (many diffs)
37 mouse 14183 Fgfr2 fibroblast growth factor re... NM_201601.2 77% 82.8% (many diffs)
38 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241675.2 76.9% 82.3% (many diffs)
39 mouse 14183 Fgfr2 fibroblast growth factor re... XM_011241677.2 76.8% 82.6% (many diffs)
40 mouse 14183 Fgfr2 fibroblast growth factor re... XM_006507357.3 74.3% 79.8% (many diffs)
41 mouse 14183 Fgfr2 fibroblast growth factor re... NM_001347638.1 74.1% 79.5% (many diffs)
42 mouse 14183 Fgfr2 fibroblast growth factor re... XR_001785477.1 33.7% (many diffs)
43 mouse 14183 Fgfr2 fibroblast growth factor re... XR_001785478.1 33.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
2538
ORF length:
2466
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggtcagc tggggtcgtt tcatctgcct ggtcgtggtc accatggcaa
121ccttgtccct ggcccggccc tccttcagtt tagttgagga taccacatta gagccagaag
181agccaccaac caaataccaa atctctcaac cagaagtgta cgtggctgcg ccaggggagt
241cgctagaggt gcgctgcctg ttgaaagatg ccgccgtgat cagttggact aaggatgggg
301tgcacttggg gcccaacaat aggacagtgc ttattgggga gtacttgcag ataaagggcg
361ccacgcctag agactccggc ctctatgctt gtactgccag taggactgta gacagtgaaa
421cttggtactt catggtgaat gtcacagatg ccatctcatc cggagatgat gaggatgaca
481ccgatggtgc ggaagatttt gtcagtgaga acagtaacaa caagagagca ccatactgga
541ccaacacaga aaagatggaa aagcggctcc atgctgtgcc tgcggccaac actgtcaagt
601ttcgctgccc agccgggggg aacccaatgc caaccatgcg gtggctgaaa aacgggaagg
661agtttaagca ggagcatcgc attggaggct acaaggtacg aaaccagcac tggagcctca
721ttatggaaag tgtggtccca tctgacaagg gaaattatac ctgtgtggtg gagaatgaat
781acgggtccat caatcacacg taccacctgg atgttgtgga gcgatcgcct caccggccca
841tcctccaagc cggactgccg gcaaatgcct ccacagtggt cggaggagac gtagagtttg
901tctgcaaggt ttacagtgat gcccagcccc acatccagtg gatcaagcac gtggaaaaga
961acggcagtaa atacgggccc gacgggctgc cctacctcaa ggttctcaag cactcgggga
1021taaatagttc caatgcagaa gtgctggctc tgttcaatgt gaccgaggcg gatgctgggg
1081aatatatatg taaggtctcc aattatatag ggcaggccaa ccagtctgcc tggctcactg
1141tcctgccaaa acagcaagcg cctggaagag aaaaggagat tacagcttcc ccagactacc
1201tggagatagc catttactgc ataggggtct tcttaatcgc ctgtatggtg gtaacagtca
1261tcctgtgccg aatgaagaac acgaccaaga agccagactt cagcagccag ccggctgtgc
1321acaagctgac caaacgtatc cccctgcgga gacaggtaac agtttcggct gagtccagct
1381cctccatgaa ctccaacacc ccgctggtga ggataacaac acgcctctct tcaacggcag
1441acacccccat gctggcaggg gtctccgagt atgaacttcc agaggaccca aaatgggagt
1501ttccaagaga taagctgaca ctgggcaagc ccctgggaga aggttgcttt gggcaagtgg
1561tcatggcgga agcagtggga attgacaaag acaagcccaa ggaggcggtc accgtggccg
1621tgaagatgtt gaaagatgat gccacagaga aagacctttc tgatctggtg tcagagatgg
1681agatgatgaa gatgattggg aaacacaaga atatcataaa tcttcttgga gcctgcacac
1741aggatgggcc tctctatgtc atagttgagt atgcctctaa aggcaacctc cgagaatacc
1801tccgagcccg gaggccaccc gggatggagt actcctatga cattaaccgt gttcctgagg
1861agcagatgac cttcaaggac ttggtgtcat gcacctacca gctggccaga ggcatggagt
1921acttggcttc ccaaaaatgt attcatcgag atttagcagc cagaaatgtt ttggtaacag
1981aaaacaatgt gatgaaaata gcagactttg gactcgccag agatatcaac aatatagact
2041attacaaaaa gaccaccaat gggcggcttc cagtcaagtg gatggctcca gaagccctgt
2101ttgatagagt atacactcat cagagtgatg tctggtcctt cggggtgtta atgtgggaga
2161tcttcacttt agggggctcg ccctacccag ggattcccgt ggaggaactt tttaagctgc
2221tgaaggaagg acacagaatg gataagccag ccaactgcac caacgaactg tacatgatga
2281tgagggactg ttggcatgca gtgcccTCCC AGAGACCAAC GTTCAAGCAG TTGGTAGAAG
2341ACTTGGATCG AATTCTCACT CTCACAACCA ATGAGGAATA CTTGGACCTC AGCCAACCTC
2401TCGAACAGTA TTCACCTAGT TACCCTGACA CAAGAAGTTC TTGTTCTTCA GGAGATGATT
2461CTGTTTTTTC TCCAGACCCC ATGCCTTACG AACCATGCCT TCCTCAGTAT CCACACATAA
2521ACGGCAGTGT TAAAACATAG GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
2581CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
2641AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATTTG GGGCAGTGGT
2701GCCCTACGGC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)