Construct: ORF TRCN0000488190
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021472.1_s317c1
- DNA Barcode:
- CTGAACTGGGGGTAGCATCTTATC
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- PHLDB1 (23187)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488190
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_001144759.3 | 99.8% | 100% | 2595A>G;3957_3958insTAAAC |
2 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271474.5 | 98.2% | 98.3% | 1_66del;2661A>G;4023_4024insTAAAC |
3 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271473.3 | 95.7% | 95.8% | (many diffs) |
4 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_001144758.3 | 95.6% | 95.7% | (many diffs) |
5 | human | 23187 | PHLDB1 | pleckstrin homology like do... | NM_015157.4 | 95.6% | 95.7% | (many diffs) |
6 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271472.3 | 94.6% | 94.8% | (many diffs) |
7 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718803.3 | 93.5% | 93.6% | (many diffs) |
8 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271471.3 | 93.2% | 93.4% | (many diffs) |
9 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718802.3 | 92.8% | 92.9% | (many diffs) |
10 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271470.3 | 92.5% | 92.6% | (many diffs) |
11 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271469.3 | 92.3% | 92.4% | (many diffs) |
12 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718801.3 | 91.8% | 91.9% | (many diffs) |
13 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271468.3 | 91.5% | 91.7% | (many diffs) |
14 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718800.3 | 90.5% | 90.6% | (many diffs) |
15 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718799.3 | 89.8% | 89.9% | (many diffs) |
16 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718798.3 | 88.9% | 89% | (many diffs) |
17 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017410.1 | 88.1% | 88.2% | (many diffs) |
18 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017409.1 | 87.6% | 87.7% | (many diffs) |
19 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017408.1 | 87.1% | 87.2% | (many diffs) |
20 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542710.2 | 86.1% | 86.2% | (many diffs) |
21 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718797.3 | 85.6% | 85.7% | (many diffs) |
22 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542708.3 | 85.5% | 85.6% | (many diffs) |
23 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542709.2 | 85.5% | 85.6% | (many diffs) |
24 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_006718796.4 | 85.4% | 85.5% | (many diffs) |
25 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542707.2 | 85.3% | 85.4% | (many diffs) |
26 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017407.1 | 85.3% | 85.4% | (many diffs) |
27 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542706.2 | 84.4% | 84.5% | (many diffs) |
28 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542705.2 | 83.8% | 83.9% | (many diffs) |
29 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542704.2 | 83.6% | 83.7% | (many diffs) |
30 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542703.2 | 83% | 83.1% | (many diffs) |
31 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005277680.3 | 82.9% | 83.1% | (many diffs) |
32 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542711.2 | 77.7% | 77.8% | (many diffs) |
33 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542713.2 | 77.6% | 77.7% | (many diffs) |
34 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542714.2 | 58.5% | 58.3% | (many diffs) |
35 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_005271475.3 | 58.2% | 57.5% | (many diffs) |
36 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_017017411.1 | 58.2% | 57.5% | (many diffs) |
37 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_947813.2 | 57.6% | (many diffs) | |
38 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_001747798.1 | 57.5% | (many diffs) | |
39 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_001747797.1 | 57.3% | (many diffs) | |
40 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XM_011542715.3 | 54.3% | 53.9% | (many diffs) |
41 | human | 23187 | PHLDB1 | pleckstrin homology like do... | XR_001747799.1 | 53.4% | (many diffs) | |
42 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243978.1 | 87.4% | 94.1% | (many diffs) |
43 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243976.1 | 86% | 92.6% | (many diffs) |
44 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243975.1 | 85% | 91.6% | (many diffs) |
45 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | NM_153537.4 | 84.4% | 90.9% | (many diffs) |
46 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243974.1 | 83.7% | 90.2% | (many diffs) |
47 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243973.1 | 83.3% | 89.7% | (many diffs) |
48 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243972.1 | 82.4% | 88.8% | (many diffs) |
49 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243971.1 | 82.2% | 88.5% | (many diffs) |
50 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243970.1 | 81.8% | 88.1% | (many diffs) |
51 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243969.1 | 80.6% | 86.8% | (many diffs) |
52 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243968.1 | 79.8% | 86% | (many diffs) |
53 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243967.1 | 79.7% | 85.9% | (many diffs) |
54 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243983.1 | 79.3% | 85.6% | (many diffs) |
55 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243966.1 | 79% | 85.1% | (many diffs) |
56 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243965.1 | 78.1% | 84.1% | (many diffs) |
57 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243964.1 | 77.9% | 83.9% | (many diffs) |
58 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243963.1 | 77.2% | 83.1% | (many diffs) |
59 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243962.1 | 76.8% | 82.7% | (many diffs) |
60 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243961.1 | 76.5% | 82.4% | (many diffs) |
61 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243960.1 | 76.2% | 82.1% | (many diffs) |
62 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243982.1 | 76% | 82% | (many diffs) |
63 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243957.1 | 75.7% | 81.5% | (many diffs) |
64 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243958.1 | 75.7% | 81.5% | (many diffs) |
65 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243956.1 | 75.5% | 81.3% | (many diffs) |
66 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243955.1 | 75.1% | 80.9% | (many diffs) |
67 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243953.1 | 74.9% | 80.7% | (many diffs) |
68 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243954.1 | 74.9% | 80.7% | (many diffs) |
69 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243981.1 | 74.6% | 80.5% | (many diffs) |
70 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509907.3 | 74.4% | 80.1% | (many diffs) |
71 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509916.3 | 74.4% | 80.1% | (many diffs) |
72 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509919.4 | 74.4% | 80.1% | (many diffs) |
73 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243980.1 | 73.7% | 79.5% | (many diffs) |
74 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243959.1 | 73.1% | 77.9% | (many diffs) |
75 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243979.1 | 69.7% | 75.2% | (many diffs) |
76 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509928.4 | 67.5% | 72.9% | (many diffs) |
77 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243977.1 | 67.5% | 72.9% | (many diffs) |
78 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243984.1 | 56.1% | 57.3% | (many diffs) |
79 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_030243985.1 | 55.8% | 56.3% | (many diffs) |
80 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_006509933.3 | 41.2% | 44.8% | (many diffs) |
81 | mouse | 102693 | Phldb1 | pleckstrin homology like do... | XM_017313091.2 | 36.2% | 39.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 4023
- ORF length:
- 3957
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaagaat 61 tcaccatgga cgctctcaat aggaaccaaa taggccctgg atgccagacc cagaccatgg 121 tgcagaaagg acccttggac ctgatcgaga caggcaaagg gctgaaagtg caaacggaca 181 aaccccacct ggtgagcctg ggcagtgggc gactcagcac agccatcacc ctcctgccgc 241 tggaggaagg gaggacggtg attggctctg cagccagaga catctcacta cagggcccag 301 gcctggctcc agagcactgc tacatcgaga acctgcgggg caccctcacc ctctacccct 361 gtggcaatgc ctgcactatt gatgggctcc ctgtccggca gcctacccgg ctcactcagg 421 gctgcatgtt gtgcctgggt cagtccacct tccttcgctt taaccacccg gctgaagcca 481 agtggatgaa aagcatgatt ccagcagggg gccgagcccc tgggcccccc tacagccctg 541 ttcctgcaga atcagaaagt ctggtaaatg ggaaccacac cccacagact gcaacacggg 601 gaccctctgc ctgtgccagc cacagttccc tggtgagctc tattgagaag gacctgcaag 661 agatcatgga ctcactggtg ctagaggagc ctggagctgc tggcaagaag cctgccgcaa 721 cctctccact gtcaccgatg gctaatggtg ggcgctacct gctgtctccc ccaaccagcc 781 ccggcgccat gtctgtgggc tccagctatg agaacacctc tccagccttc tctccactct 841 cttcaccagc cagcagtgga agctgtgcca gtcactcacc cagtgggcaa gagccaggac 901 cttctgtgcc cccgctggta cctgcccgtt cctccagcta ccatctggcc ctacagcccc 961 cacagtcccg cccaagtggt gctcgctccg agagtcctcg gctgagcagg aaagggggcc 1021 atgagaggcc tcccagccct ggcctccggg gtctgctgac agacagccct gcagctactg 1081 tcttggcgga ggcccggaga gccactgaga gcccccggct gggtgggcag ctgcctgtgg 1141 tggccatcag cctgagtgaa tacccagctt ctggtgctct cagtcaaccc accagcattc 1201 ctggcagccc caagtttcag cctccagtcc ctgctccccg aaacaagatt ggcacactcc 1261 aggaccgccc tcccagccct ttccgtgagc ctccaggcag tgagcgggtg ctaacaacca 1321 gcccctcacg ccaactggtg ggccgaacat tttcagatgg gttagccacc cgtaccctgc 1381 agcctcctga gagtccccgc ctgggccggc ggggcctgga cagtatgcga gaactacccc 1441 ccttaagtcc atctctgtcc cggcgagctc tctccccgct gcccacccgg accaccccag 1501 atcccaagct aaacagggaa gtggcagaga gtcctcggcc ccggcgctgg gcagcccatg 1561 gggcttcacc agaggacttc tccctgacgc tgggggcacg gggccgtagg acacggagcc 1621 cctcacccac actgggtgag tctctggcac cccacaaggg cagcttcagt ggcaggctga 1681 gcccagccta cagtctgggc tctcttactg gggcttcacc ctgccagagt ccctgtgtcc 1741 agaggaagct ctccagcggg gacttgcggg tgcctgtcac aagggagcgg aaaaatagca 1801 tcacagagat cagtgacaat gaggacgacc tcctggagta ccaccggcga cagcgccaag 1861 agcggctccg ggagcaggag atggagaggc tggaacgcca gcgcctggag accatcctga 1921 acctgtgtgc cgaatacagc cgggctgatg ggggacctga ggctggggag cttcccagca 1981 ttggggaggc caccgcagca ttggcactgg caggccggag gccctcacga ggccttgcag 2041 gggcctctgg gcggagcagc gaggagcctg gcgttgccac ccaacgccta tgggagagta 2101 tggagcgctc agatgaggaa aatctcaagg aggagtgcag cagcactgag agcacccagc 2161 aggagcacga agatgcacct agcaccaagc tccagggaga ggtgctagcc ctggaagaag 2221 agcgggctca ggtgctgggg cacgtggagc agctcaaggt ccgtgtgaag gagctagagc 2281 agcagctgca ggagtcagcc cgagaggccg aaatggagcg ggcactgctg cagggagaga 2341 gggaggcaga gcgggcactg ctgcagaagg agcagaaggc agtggatcag ctgcaggaga 2401 agctggtggc cttggagaca ggcatccaga aggagaggga caaggaggca gaggccctgg 2461 agactgagac aaagctcttt gaggacttgg agttccagca gttggagcgg gagagccgcg 2521 tggaggagga gcgcgagctg gccggccagg ggctgctccg gagcaaggct gagctgctcc 2581 gcagcatcgc caagaggaag gagcgcctgg ccatcctgga cagtcaggct gggcagatcc 2641 gggctcaggc cgtgcaggag tcagaacgcc tggcccggga caagaatgcc tccttacagc 2701 tgctgcaaaa ggagaaggag aagctgactg tgctggaaag gagataccac tcactcacag 2761 ggggcaggcc tttcccgaag accacatcga ccctcaaaga ggtttaccgc tccaagatgg 2821 atggcgaggc caccagcccc cttccccgga cccgcagcgg ccccctcccc tcctcctctg 2881 gctcttcctc ctcctcctcc cagctcagcg tggctaccct ggggcgtagc ccctccccaa 2941 agagcgctct actcacccag aatggcacgg gcagccttcc tcgcaacctg gcagccacac 3001 tgcaggacat cgagaccaag cgccaactag ctctgcagca gaagggacaa caagtgattg 3061 aagagcagcg gcggcgactg gctgagctga agcagaaagc ggcagctgag gcacagtgcc 3121 agtgggatgc ccttcacggg gcagcaccct tcccagcggg cccctcgggc ttcccccctc 3181 tcatgcacca ctctatccta caccacctgc ctgcggggcg ggagcgtggg gaggagggtg 3241 agcacgccta tgatacgctg agtctggaga gctctgacag catggagacc agcatctcca 3301 ccgggggcaa ctcggcctgc tcccctgaca acatgtccag cgcgagtggt ctggacatgg 3361 ggaagatcga ggagatggag aagatgctga aagaggctca tgcagagaag aaccggctca 3421 tggagtcgag ggagcgggag atggagctgc ggcggcaggc cctggaggag gagcggcgga 3481 ggcgtgagca ggtagaacgg aggctgcaga gtgagagtgc ccggaggcag cagctggtcg 3541 agaaggaggt caagatgcgg gagaaacaat tttcccaggc acgacccctg acccgctacc 3601 tgccaatccg gaaggaggac tttgacctga agacacatat tgagtcatcg ggccatggtg 3661 ttgatacctg cctgcacgtg gtgcTCAGCA GCAAGGTCTG CCGTGGCTAC TTGGTCAAGA 3721 TGGGCGGCAA GATTAAATCA TGGAAGAAGC GCTGGTTTGT CTTCGACCGG CTCAAGCGCA 3781 CCCTTTCCTA TTATGTGGAC AAGCATGAGA CGAAGCTGAA GGGAGTCATC TATTTCCAGG 3841 CCATTGAGGA AGTGTACTAC GACCACCTGC GCAGTGCAGC CAAGAGCCCG AACCCAGCCC 3901 TCACCTTCTG CGTAAAGACC CATGACCGGC TGTACTACAT GGTGGCCCCA TCTGCAGAGG 3961 CCATGCGTAT CTGGATGGAT GTCATTGTCA CAGGGGCTGA GGGCTACACT CAGTTCATGA 4021 ACTAAACTAG TGACCCAGCT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 4081 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 4141 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACTG AACTGGGGGT AGCATCTTAT 4201 CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t