Construct: ORF TRCN0000488252
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019781.1_s317c1
- DNA Barcode:
- CCATAATCCTTCGCATTACGCTCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TAOK3 (51347)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488252
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346488.2 | 99.8% | 99.6% | 140G>A;1231G>A;2694_2695insG |
| 2 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346489.2 | 99.8% | 99.6% | 140G>A;1231G>A;2694_2695insG |
| 3 | human | 51347 | TAOK3 | TAO kinase 3 | NM_016281.4 | 99.8% | 99.6% | 140G>A;1231G>A;2694_2695insG |
| 4 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346487.2 | 98.8% | 98.6% | (many diffs) |
| 5 | human | 51347 | TAOK3 | TAO kinase 3 | XM_005253898.2 | 98.8% | 98.6% | (many diffs) |
| 6 | human | 51347 | TAOK3 | TAO kinase 3 | XM_006719445.3 | 98.8% | 98.6% | (many diffs) |
| 7 | human | 51347 | TAOK3 | TAO kinase 3 | XM_011538437.2 | 98.8% | 98.6% | (many diffs) |
| 8 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019408.2 | 98.8% | 98.6% | (many diffs) |
| 9 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019409.2 | 98.8% | 98.6% | (many diffs) |
| 10 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019410.2 | 98.8% | 98.6% | (many diffs) |
| 11 | human | 51347 | TAOK3 | TAO kinase 3 | XM_024449010.1 | 98.8% | 98.6% | (many diffs) |
| 12 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346491.2 | 81% | 80.8% | 0_1ins510;721G>A;2184_2185insG |
| 13 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346492.2 | 81% | 80.8% | 0_1ins510;721G>A;2184_2185insG |
| 14 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019413.2 | 81% | 80.8% | 0_1ins510;721G>A;2184_2185insG |
| 15 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346490.2 | 80.1% | 80% | (many diffs) |
| 16 | human | 51347 | TAOK3 | TAO kinase 3 | XM_017019412.2 | 80.1% | 80% | (many diffs) |
| 17 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346493.2 | 78.3% | 77.3% | (many diffs) |
| 18 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346494.2 | 48.7% | 48.7% | 0_1ins1380;1314_1315insG |
| 19 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346495.2 | 48.7% | 48.7% | 0_1ins1380;1314_1315insG |
| 20 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346496.2 | 46.1% | 45.3% | (many diffs) |
| 21 | human | 51347 | TAOK3 | TAO kinase 3 | NM_001346497.2 | 46.1% | 45.3% | (many diffs) |
| 22 | mouse | 330177 | Taok3 | TAO kinase 3 | NM_001081308.2 | 88.5% | 95.4% | (many diffs) |
| 23 | mouse | 330177 | Taok3 | TAO kinase 3 | NM_001199685.1 | 88.5% | 95.4% | (many diffs) |
| 24 | mouse | 330177 | Taok3 | TAO kinase 3 | NM_183306.2 | 88.5% | 95.4% | (many diffs) |
| 25 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_006530385.3 | 88.5% | 95.4% | (many diffs) |
| 26 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_011248219.2 | 88.5% | 95.4% | (many diffs) |
| 27 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_011248220.2 | 88.5% | 95.4% | (many diffs) |
| 28 | mouse | 330177 | Taok3 | TAO kinase 3 | XM_011248221.2 | 72.4% | 77.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 72
- ORF end:
- 2769
- ORF length:
- 2697
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 caggcttcac catgcgtaaa ggggtgctga aggacccaga gattgccgat ctattctaca 121 aagatgatcc tgaggaactt tttattggtt tgcatgaaat tggacatgga agttttggag 181 cagtttattt tgctacaaat gctcacacca atgaggtggt ggcaattaag aagatgtcct 241 atagtgggaa gcagacccat gagaaatggc aagatattct taaggaagtt aaatttttac 301 gacaattgaa gcatcctaat actattgagt acaaaggctg ttacttgaaa gaacacactg 361 cttggttggt gatggaatat tgcttaggct cagcctctga tttattagaa gttcataaaa 421 aaccacttca ggaagtggag atcgctgcca ttactcatgg agccttgcat ggactagcct 481 acctacattc tcatgcattg attcataggg atattaaagc aggaaatatt cttctaacag 541 agccaggtca ggtaaaacta gctgattttg gatctgcttc aatggcttct cctgccaact 601 ccttcgtggg cacaccttac tggatggctc cagaggtgat cttagctatg gatgaaggac 661 agtatgatgg gaaagttgat atttggtcac ttggcatcac ttgtattgaa ttggcggaac 721 ggaagccgcc ccttttcaac atgaatgcaa tgagtgcctt atatcacatt gcccagaatg 781 actccccaac gttacagtct aatgaatgga cagactcctt taggagattt gttgattact 841 gcttgcagaa aatacctcag gaaaggccaa catcagcaga actattaagg catgactttg 901 ttcgacgaga ccggccacta cgtgtcctca ttgacctcat acagaggaca aaagatgcag 961 ttcgtgagct agataaccta cagtaccgaa aaatgaaaaa aatacttttc caagagacac 1021 ggaatggacc cttgaatgag tcacaggagg atgaggaaga cagtgaacat ggaaccagcc 1081 tgaacaggga aatggacagc ctgggcagca accattccat tccaagcatg tccgtgagca 1141 caggcagcca gagcagcagt gtgaacagca tgcaggaagt catggacgag agcagttccg 1201 aacttgtcat gatgcacgat gacgaaagca caatcaattc cagctcctcc gtcgtgcata 1261 agaaagatca tgtattcata agggatgagg cgggccacgg caatcccagg cctgagccgc 1321 ggcctaccca gtcagttcag agccaggccc tccactaccg gaacagagag cgctttgcca 1381 cgatcaaatc agcatctttg gttacacgac agatccatga gcatgagcag gagaacgagt 1441 tgcgggaaca gatgtcaggt tataagcgga tgcggcgcca gcaccagaag cagctgatcg 1501 ccctggagaa caagctgaag gctgagatgg acgagcaccg cctcaagcta cagaaggagg 1561 tggagacgca tgccaacaac tcgtccatcg agctggagaa gctggccaag aagcaagtgg 1621 ctatcataga aaaggaggca aaggtagctg cagcagatga gaagaagttc cagcaacaga 1681 tcttggccca gcagaagaaa gatttgacaa ctttcttaga aagtcagaag aagcagtata 1741 agatttgtaa ggaaaaaata aaagaggaaa tgaatgagga ccatagcaca cccaagaaag 1801 agaagcaaga gcggatctcc aaacataaag agaacttgca gcacacacag gctgaagagg 1861 aagcccacct tctcactcaa cagagactgt actacgacaa aaattgtcgt ttcttcaagc 1921 ggaaaataat gatcaagcgg cacgaggtgg agcagcagaa cattcgggag gaactaaata 1981 aaaagaggac ccagaaggag atggagcatg ccatgctaat ccggcacgac gagtccaccc 2041 gagagctaga gtacaggcag ctgcacacgt tacagaagct acgcatggat ctgatccgtt 2101 tacagcacca gacggaactg gaaaaccagc tggagtacaa taagaggcga gaaagagaac 2161 tgcacagaaa gcatgtcatg gaacttcggc aacagccaaa aaacttaaag gccatggaaa 2221 tgcaaattaa aaaacagttt caggacactt gcaaagtaca gaccaaacag tataaagcac 2281 tcaagaatca ccagttggaa gttactccaa agaatgagca caaaacaatc ttaaagacac 2341 tgaaagatga gcagacaaga aaacttgcca ttttggcaga gcagtatgaa cagagtataa 2401 atgaaatgat ggcctctcaA GCGTTACGGC TAGATGAGGC TCAAGAAGCA GAATGCCAGG 2461 CCTTGAGGCT ACAGCTCCAG CAGGAAATGG AGCTGCTCAA CGCCTACCAG AGCAAAATCA 2521 AGATGCAAAC AGAGGCACAA CATGAACGTG AGCTCCAGAA GCTAGAGCAG AGAGTGTCTC 2581 TGCGCAGAGC ACACCTTGAG CAGAAGATTG AAGAGGAGCT GGCTGCCCTT CAGAAGGAAC 2641 GCAGCGAGAG AATAAAGAAC CTATTGGAAA GGCAAGAGCG AGAGATTGAA ACTTTTGACA 2701 TGGAGAGCCT CAGAATGGGA TTTGGGAATT TGGTTACATT AGATTTTCCT AAGGAGGACT 2761 ACAGAGACCC AGCTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 2821 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 2881 CTTGGCTTTA TATATCTTGT GGAAAGGACG ACCATAATCC TTCGCATTAC GCTCAACGCG 2941 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt