Construct: ORF TRCN0000489746

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019673.1_s317c1
DNA Barcode:
AGCGACCGACGTAAGGTACTCGAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDKL3 (51265)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000489746
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51265 CDKL3 cyclin dependent kinase like 3 NM_016508.3 99.9% 99.7% 1365_1366insG
2 human 51265 CDKL3 cyclin dependent kinase like 3 NM_001113575.2 76.8% 76.8% 1366_1776delinsG
3 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446092.1 76.4% 76.4% 540_575del;1402_1785delinsG
4 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446091.1 76% 76% 540_575del;1402_1794delinsG
5 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009534.1 75.5% 75.5% 540_575del;1402_1806delinsG
6 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446090.1 75.5% 75.5% 540_575del;1402_1806delinsG
7 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009533.1 75.3% 75.3% 540_575del;1402_1812delinsG
8 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009532.1 74.9% 74.9% 1366_1821delinsG
9 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446088.1 74.9% 74.9% 1366_1821delinsG
10 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446089.1 74.9% 74.9% 1366_1821delinsG
11 human 51265 CDKL3 cyclin dependent kinase like 3 XM_011543429.2 73.5% 73.5% 540_575del;1402_1857delinsG
12 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446086.1 73.5% 73.5% 540_575del;1402_1857delinsG
13 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446087.1 73.5% 73.5% 540_575del;1402_1857delinsG
14 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446095.1 72.6% 63.9% (many diffs)
15 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009536.1 60.4% 60.4% 540_575del;828_829ins243;1159_1614delinsG
16 human 51265 CDKL3 cyclin dependent kinase like 3 XR_002956161.1 52.7% (many diffs)
17 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446093.1 49.9% 47.7% (many diffs)
18 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446094.1 48.6% 45% (many diffs)
19 human 51265 CDKL3 cyclin dependent kinase like 3 XR_002956160.1 48.5% (many diffs)
20 human 51265 CDKL3 cyclin dependent kinase like 3 XR_002956159.1 47.4% 1_865del;1405_1440del;2267_2878delinsG
21 human 51265 CDKL3 cyclin dependent kinase like 3 NM_001300853.1 45% 45% 0_1ins567;799_1203delinsG
22 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446103.1 44.9% 44.9% 0_1ins567;799_1209delinsG
23 human 51265 CDKL3 cyclin dependent kinase like 3 NM_001349363.1 43.8% 43.8% 0_1ins567;799_1254delinsG
24 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446096.1 43.8% 43.8% 0_1ins567;799_1254delinsG
25 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446097.1 43.8% 43.8% 0_1ins567;799_1254delinsG
26 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446098.1 43.8% 43.8% 0_1ins567;799_1254delinsG
27 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446099.1 43.8% 43.8% 0_1ins567;799_1254delinsG
28 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446100.1 43.8% 43.8% 0_1ins567;799_1254delinsG
29 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446101.1 43.8% 43.8% 0_1ins567;799_1254delinsG
30 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446102.1 43.8% 43.8% 0_1ins567;799_1254delinsG
31 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446104.1 43.8% 43.8% 0_1ins567;799_1254delinsG
32 human 51265 CDKL3 cyclin dependent kinase like 3 NM_001349364.1 26.3% 26.3% 0_1ins885;481_936delinsG
33 human 51265 CDKL3 cyclin dependent kinase like 3 NM_001349365.1 26.3% 26.3% 0_1ins885;481_936delinsG
34 human 51265 CDKL3 cyclin dependent kinase like 3 NM_001349366.1 26.3% 26.3% 0_1ins885;481_936delinsG
35 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009544.2 26.3% 26.3% 0_1ins885;481_936delinsG
36 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009545.2 26.3% 26.3% 0_1ins885;481_936delinsG
37 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009546.1 26.3% 26.3% 0_1ins885;481_936delinsG
38 human 51265 CDKL3 cyclin dependent kinase like 3 XM_017009547.1 26.3% 26.3% 0_1ins885;481_936delinsG
39 human 51265 CDKL3 cyclin dependent kinase like 3 XM_024446105.1 26.3% 26.3% 0_1ins885;481_936delinsG
40 mouse 213084 Cdkl3 cyclin-dependent kinase-like 3 NM_001166657.1 66% 60.9% (many diffs)
41 mouse 213084 Cdkl3 cyclin-dependent kinase-like 3 XM_017314422.1 66% 60.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
75
ORF end:
1443
ORF length:
1368
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcgc caccatggag atgtatgaaa cccttggaaa agtgggagag ggaagttacg
121gaacagtcat gaaatgtaaa cataagaata ctgggcagat agtggccatt aagatatttt
181atgagagacc agaacaatct gtcaacaaaa ttgcgatgag agaaataaag tttctaaagc
241aatttcatca cgaaaacctg gtcaatctga ttgaagtttt tagacagaaa aagaaaattc
301atttggtatt tgaatttatt gaccacacag tattagatga gttacaacat tattgtcatg
361gactagagag taagcgactt agaaaatacc tcttccagat ccttcgagca attgactatc
421ttcacagtaa taatatcatt catcgagata taaaacctga gaatatttta gtatcccagt
481caggaattac taagctctgt gattttggtt ttgcacgaac actagcagct cctggggaca
541tttatacgga ctatgtggcc acacgctggt atagagctcc cgaattagta ttaaaagata
601cttcttatgg aaaacctgtg gatatctggg ctttgggctg tatgatcatt gagatggcca
661ctggaaatcc ctatcttcct agtagttctg atttggattt actccataaa attgttttga
721aagtgggcaa tttgtcacct cacttgcaga atatcttttc caagagcccc atttttgctg
781gggtagttct tcctcaagtt caacacccca aaaatgcaag aaaaaaatat ccaaagctta
841atggattgtt ggcagatata gttcatgctt gtttacaaat tgatcctgct gacaggatat
901catctagtga tcttttgcat catgagtatt ttactagaga tggatttatt gaaaaattca
961tgccagaact gaaagctaaa ttactgcagg aagcaaaagt caattcatta ataaagccaa
1021aagagagttc taaagaaaat gaactcagga aagatgaaag aaaaaCAGTT TATACCAATA
1081CACTGCTAAG TAGTTCAGTT TTGGGAAAGG AAATAGAAAA AGAGAAAAAG CCCAAGGAGA
1141TCAAAGTCAG AGTTATTAAA GTCAAAGGAG GAAGAGGAGA TATCTCAGAA CCAAAAAAGA
1201AAGAGTATGA AGGTGGACTT GGTCAACAGG ATGCAAATGA AAATGTTCAT CCTATGTCTC
1261CAGATACAAA ACTTGTAACC ATTGAACCAC CAAACCCTAT CAATCCCAGC ACTAACTGTA
1321ATGGCTTGAA AGAAAATCCA CATTGCGGAG GTTCTGTGAC AATGCCACCC ATCAATCTAA
1381CTAACAGTAA TTTGATGGCT GCAAATCTCA GTTCAAATCT CTTTCACCCC AGTGTGAGGG
1441ACCCAGCTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1501GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1561TTTATATATC TTGTGGAAAG GACGAAGCGA CCGACGTAAG GTACTCGAGA CGCGTTAAGT
1621Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)