Construct: ORF TRCN0000492045
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014850.1_s317c1
- Derived from:
- ccsbBroadEn_07005
- DNA Barcode:
- ACAGCCTGGCCCTACACCTATTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DENND2B (6764)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000492045
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 6764 | DENND2B | DENN domain containing 2B | NM_005418.3 | 99.8% | 99.6% | (many diffs) |
2 | human | 6764 | DENND2B | DENN domain containing 2B | NM_213618.2 | 99.8% | 99.6% | (many diffs) |
3 | human | 6764 | DENND2B | DENN domain containing 2B | XM_011520318.1 | 99.8% | 99.6% | (many diffs) |
4 | human | 6764 | DENND2B | DENN domain containing 2B | XM_005253077.1 | 97.3% | 97% | (many diffs) |
5 | human | 6764 | DENND2B | DENN domain containing 2B | XM_011520309.1 | 95.6% | 95.4% | (many diffs) |
6 | human | 6764 | DENND2B | DENN domain containing 2B | XM_017018186.1 | 84% | 83.9% | (many diffs) |
7 | human | 6764 | DENND2B | DENN domain containing 2B | XR_001747943.1 | 79.1% | (many diffs) | |
8 | human | 6764 | DENND2B | DENN domain containing 2B | XR_001747942.1 | 78.1% | (many diffs) | |
9 | human | 6764 | DENND2B | DENN domain containing 2B | XR_001747941.1 | 78% | (many diffs) | |
10 | human | 6764 | DENND2B | DENN domain containing 2B | XM_011520320.1 | 77.5% | 76.4% | (many diffs) |
11 | human | 6764 | DENND2B | DENN domain containing 2B | XM_011520322.1 | 75.6% | 73.9% | (many diffs) |
12 | human | 6764 | DENND2B | DENN domain containing 2B | XR_930887.2 | 75.4% | (many diffs) | |
13 | human | 6764 | DENND2B | DENN domain containing 2B | XM_011520321.2 | 74.3% | 72.7% | (many diffs) |
14 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957161.1 | 66.3% | (many diffs) | |
15 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957159.1 | 65.5% | (many diffs) | |
16 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957178.1 | 65.2% | (many diffs) | |
17 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957179.1 | 65.1% | (many diffs) | |
18 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957175.1 | 64.7% | (many diffs) | |
19 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957165.1 | 64.5% | (many diffs) | |
20 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957177.1 | 64.4% | (many diffs) | |
21 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957172.1 | 64.4% | (many diffs) | |
22 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957169.1 | 64.3% | (many diffs) | |
23 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957174.1 | 64.2% | (many diffs) | |
24 | human | 6764 | DENND2B | DENN domain containing 2B | XM_011520324.2 | 64.2% | 62% | (many diffs) |
25 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957168.1 | 64.1% | (many diffs) | |
26 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957163.1 | 64% | (many diffs) | |
27 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957166.1 | 63.8% | (many diffs) | |
28 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957170.1 | 63.5% | (many diffs) | |
29 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957167.1 | 62.7% | (many diffs) | |
30 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957164.1 | 62.6% | (many diffs) | |
31 | human | 6764 | DENND2B | DENN domain containing 2B | NM_139157.2 | 62.3% | 60.4% | (many diffs) |
32 | human | 6764 | DENND2B | DENN domain containing 2B | XM_005253083.2 | 62.3% | 60.4% | (many diffs) |
33 | human | 6764 | DENND2B | DENN domain containing 2B | XM_011520329.1 | 62.3% | 60.4% | (many diffs) |
34 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957176.1 | 61.6% | (many diffs) | |
35 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957162.1 | 61.3% | (many diffs) | |
36 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957160.1 | 60.7% | (many diffs) | |
37 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957171.1 | 60.1% | (many diffs) | |
38 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957173.1 | 57% | (many diffs) | |
39 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957182.1 | 47.9% | (many diffs) | |
40 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957187.1 | 45.7% | (many diffs) | |
41 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957188.1 | 45.7% | (many diffs) | |
42 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957183.1 | 45.2% | (many diffs) | |
43 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957185.1 | 44.4% | (many diffs) | |
44 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957181.1 | 44.3% | (many diffs) | |
45 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957186.1 | 43.8% | (many diffs) | |
46 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957180.1 | 43.8% | (many diffs) | |
47 | human | 6764 | DENND2B | DENN domain containing 2B | XR_002957184.1 | 43.2% | (many diffs) | |
48 | mouse | 76954 | St5 | suppression of tumorigenici... | NM_001001326.1 | 89.6% | 92.7% | (many diffs) |
49 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_006508320.3 | 89.6% | 92.7% | (many diffs) |
50 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241940.2 | 87.7% | 90.7% | (many diffs) |
51 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241941.2 | 87.7% | 90.7% | (many diffs) |
52 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241942.2 | 87.7% | 90.7% | (many diffs) |
53 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241943.2 | 87.7% | 90.7% | (many diffs) |
54 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241944.2 | 87.7% | 90.7% | (many diffs) |
55 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241945.2 | 87.7% | 90.7% | (many diffs) |
56 | mouse | 76954 | St5 | suppression of tumorigenici... | NR_037617.1 | 68.7% | (many diffs) | |
57 | mouse | 76954 | St5 | suppression of tumorigenici... | XR_001778009.1 | 68.7% | (many diffs) | |
58 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241946.2 | 62.4% | 62.9% | (many diffs) |
59 | mouse | 76954 | St5 | suppression of tumorigenici... | XM_011241947.2 | 62.3% | 62.4% | (many diffs) |
60 | mouse | 76954 | St5 | suppression of tumorigenici... | NM_029811.2 | 57.5% | 60.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3477
- ORF length:
- 3411
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc catgactgcc aacaagaatt ccagcatcac ccacggagct ggtggcacta 121 aagcccctcg ggggactctg agcaggtctc agtcagtctc tccacctcca gttctctccc 181 caccaaggag tcccatctac ccgctcagtg atagtgaaac ctcagcctgc aggtacccca 241 gccactccag ctcccgggtg ctcctcaagg accggcaccc cccagctcct tcaccccaga 301 atcctcaaga tccctcccca gatacttccc cacccacctg tcccttcaag accgccagct 361 tcggttattt ggacagaagc ccttcggcgt gcaagagaga cgcccaaaag gaaagtgtcc 421 aaggcgcagc ccaggatgta gcaggggtcg ctgcctgcct cccccttgcc cagagcacgc 481 cattcccggg gccagcagct ggcccccggg gcgtcttgct gacccgtacc ggtacccgcg 541 cccacagcct gggcatccgg gagaagatat cagcatggga aggtcgccga gaggcgtcgc 601 ccaggatgag catgtgtgga gagaagcggg agggctctgg gagcgagtgg gcggccagtg 661 agggctgccc cagcctgggc tgtcccagcg tggtgccgtc cccctgcagc tctgaaaaga 721 cctttgattt caagggcctc cggaggatga gcaggacctt ctccgagtgt tcctacccag 781 agactgagga ggagggagag gcgctccctg tccgggactc tttctaccgg ctggagaaac 841 ggctgggccg gagtgagccc agcgccttcc tcagggggca tggcagcagg aaggagagct 901 cagcagtgct gagccggatc cagaaaattg aacaggtcct gaaggagcag ccgggccggg 961 ggctccccca gctccccagc agctgctaca gcgtggaccg ggggaaaagg aacactggaa 1021 ccttgggctc cttggaggag ccggcagggg gcgcgagtgt gagcgctggc agccgggcag 1081 tcggagtggc tggtgttgcg ggggaggcgg gcccaccccc agagagggaa ggcagtggtt 1141 ccactaagcc cgggacccct ggaaatagcc ctagctccca gcggctgcca tcgaagagtt 1201 ccctcgatcc cgctgtgaac cctgtcccca aacccaagcg cacctttgaa tacgaggctg 1261 acaagaaccc caagagtaag cccagtaatg gtctacctcc ttcacccaca cctgctgctc 1321 cacctccctt gccctccacc ccagccccgc cagtcacccg gagacccaag aaggacatgc 1381 gtggtcaccg caagtcccag agcagaaaat cctttgagtt tgaggatgca tccagtctcc 1441 agtccctgta cccctcttct cccactgaga atggtactga gaaccaaccc aagtttggat 1501 ccaaaagcac tttagaagaa aatgcctatg aagatattgt gggagatctg cccaaggaga 1561 atccatatga ggatgtggac ttaaagagcc gaagagcagg acgaaaatcc cagcaactgt 1621 ctgagaactc cttggactct ttgcacagga tgtggagtcc tcaggacagg aagtacaaca 1681 gcccgcccac acagctttcc ctgaaaccca acagccagtc cctgcgcagt gggaactggt 1741 cagaaaggaa gagccaccgg ctgccacgat tacccaagag gcacagccat gacgacatgc 1801 tgctgctggc tcagctgagt ctgccgtcct caccctccag cctcaatgaa gacagcctca 1861 gcaccaccag cgagctgctg tccagccgcc gggcccgccg cattcccaag cttgtccaaa 1921 gaactaactc catctacaat gccaagagag gaaagaagag attaaaaaag ttgtctatgt 1981 ccagcattga aacagcatca ctgagagatg aaaacagtga gagcgagagc gactctgatg 2041 acaggttcaa agcccacaca cagcgcctgg tccacatcca gtcgatgctg aagcgcgccc 2101 ccagctatcg cacgctggag ctggagctgc tggagtggca ggagcgggag ctttttgagt 2161 actttgtggt ggtgtccctc aagaagaagc catcgcgaaa cacctacctc cccgaagtct 2221 cctaccagtt tcccaagctg gaccgaccca ccaagcagat gcgagaggca gaggaaaggc 2281 tcaaagccat tccccagttt tgcttccctg atgccaagga ctggcttcct gtgtcagagt 2341 atagcagtga gaccttttct ttcatgctga ctggggaaga tggcggcaga cgctttggct 2401 actgcaggcg cttactgcca agtgggaaag ggccccggtt gccagaggtg tactgtgtca 2461 tcagccgcct tggctgcttc ggcttgtttt ccaaggtcct agatgaggtg gagcgccggc 2521 gtgggatctc cgctgcattg gtctatcctt tcatgagaag tctcatggag tcgcccttcc 2581 cagccccagg gaagaccatc aaagtgaaga cattcctgcc aggtgctggc aatgaggtgt 2641 tagagctgcg gcggcccatg gactcaaggc tggagcacgt ggactttgag tgccttttta 2701 cctgcctcag tgtgcgccag ctcatccgaa tctttgcctc actgctgctg gagcgccggg 2761 tcatttttgt ggcagataag ctcagtaccc tctccagctg ctcccacgcg gtggtggcct 2821 tgctctaccc cttctcctgg cagcacacct tcattcctgt cctcccggcc tccatgattg 2881 acatcgtctg ctgtcccacc cccttcctgg ttggcctgct ctccagctcc ctccccaaac 2941 tgaaggagct gcctgtggag gaggcgctga tggtgaatct gggatctgac cgattcatcc 3001 gacagatgga cgacgaagac acgttgttac ctaggaagtt acaggcagct ctggagcagg 3061 ctctggagag gaagaatgag ctgatctccc aggactctga cagcgactcc gacgatgaat 3121 gtaataccct caatgggctg gtgtcggagg tgtttatccg gttctttgtg gagaccgttg 3181 ggcactactc ccTCTTTCTG ACACAGAGTG AGAAGGGAGA GAGGGCCTTT CAGCGAGAGG 3241 CCTTCCGCAA ATCTGTGGCC TCCAAAAGCA TCCGCCGCTT TCTTGAGGTT TTTATGGAGT 3301 CTCAGATGTT TGCTGGCTTC ATCCAAGACA GGGAGCTAAG AAAGTGTCGG GCAAAGGGCC 3361 TTTTTGAGCA GCGAGTGGAG CAGTACTTAG AAGAACTCCC AGACACTGAG CAGAGTGGAA 3421 TGAATAAGTT TCTCCGAGGT TTGGGCAACA AAATGAAGTT TCTCCACAAG AAGAATTACC 3481 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 3541 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 3601 ATATATCTTG TGGAAAGGAC GAACAGCCTG GCCCTACACC TATTGTACGC GTTAAGTCga 3661 caatcaacct ctggattaca aaatttgtga aagatt