Construct: ORF TRCN0000492123

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021716.2_s317c1
DNA Barcode:
CGGATCTTCCTACATAGGCCATCA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
MET (4233)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000492123
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4233 MET MET proto-oncogene, recepto... NM_001324402.2 43.6% .2% 1_1624del
2 human 4233 MET MET proto-oncogene, recepto... XM_006715990.2 43.6% .2% 1_1624del
3 human 4233 MET MET proto-oncogene, recepto... NM_000245.4 30.1% .1% 1_2914del
4 human 4233 MET MET proto-oncogene, recepto... NM_001127500.3 29.7% .1% 1_2968del
5 human 4233 MET MET proto-oncogene, recepto... XM_011516223.1 29.7% .1% 1_2971del
6 human 4233 MET MET proto-oncogene, recepto... XR_001744772.1 19.1% 1_3045del;4302_6566del
7 mouse 17295 Met met proto-oncogene XM_006505002.3 26.6% .1% (many diffs)
8 mouse 17295 Met met proto-oncogene NM_008591.2 26.4% .1% (many diffs)
9 mouse 17295 Met met proto-oncogene XM_011241042.2 26.4% .1% (many diffs)
10 mouse 17295 Met met proto-oncogene XM_011241043.2 26.4% .1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
61
ORF end:
97
ORF length:
36
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaatacg
61atgcaagagt acacactcct catttggata ggcttgtaag tgcccgaagt gtaagcccaa
121ctacagaaat ggtttcaaat gaatctgtag actaccgagc tacttttcca gaagatcagt
181ttcctaattc atctcagaac ggttcatgcc gacaagtgca gtatcctctg acagacatgt
241cccccatcct aactagtggg gactctgata tatccagtcc attactgcaa aatactgtcc
301acattgacct cagtgctcta aatccagagc tggtccaggc agtgcagcat gtagtgattg
361ggcccagtag cctgattgtg catttcaatg aagtcatagg aagagggcat tttggttgtg
421tatatcatgg gactttgttg gacaatgatg gcaagaaaat tcactgtgct gtgaaatcct
481tgaacagaat cactgacata ggagaagttt cccaatttct gaccgaggga atcatcatga
541aagattttag tcatcccaat gtcctctcgc tcctgggaat ctgcctgcga agtgaagggt
601ctccgctggt ggtcctacca tacatgaaac atggagatct tcgaaatttc attcgaaatg
661agactcataa tccaactgta aaagatctta ttggctttgg tcttcaagta gccaaaggca
721tgaaatatct tgcaagcaaa aagtttgtcc acagagactt ggctgcaaga aactgtatgc
781tggatgaaaa attcacagtc aaggttgctg attttggtct tgccagagac atgtatgata
841aagaatacta tagtgtacac aacaaaacag gtgcaaagct gccagtgaag tggatggctt
901tggaaagtct gcaaactcaa aagtttacca ccaagtcaga tgtgtggtcc tttggcgtgc
961tcctctggga gctGATGACA AGAGGAGCCC CACCTTATCC TGACGTAAAC ACCTTTGATA
1021TAACTGTTTA CTTGTTGCAA GGGAGAAGAC TCCTACAACC CGAATACTGC CCAGACCCCT
1081TATATGAAGT AATGCTAAAA TGCTGGCACC CTAAAGCCGA AATGCGCCCA TCCTTTTCTG
1141AACTGGTGTC CCGGATATCA GCGATCTTCT CTACTTTCAT TGGGGAGCAC TATGTCCATG
1201TGAACGCTAC TTATGTGAAC GTAAAATGTG TCGCTCCGTA TCCTTCTCTG TTGTCATCAG
1261AAGATAACGC TGATGATGAG GTGGACACAC GACCAGCCTC CTTCTGGGAG ACATCATAGG
1321ACCCAGCTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
1381GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
1441TTTATATATC TTGTGGAAAG GACGACGGAT CTTCCTACAT AGGCCATCAA CGCGTTAAGT
1501Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)

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