Construct: ORF TRCN0000492257
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011615.1_s317c1
- Derived from:
- ccsbBroadEn_03674
- DNA Barcode:
- CAGAGTAATCATATCCCTTTGTTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CBWD1 (55871)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000492257
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_018491.3 | 100% | 100% | |
2 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_172003.3 | 98.9% | 98.4% | (many diffs) |
3 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_201453.3 | 98.8% | 97.9% | (many diffs) |
4 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001330668.1 | 98.8% | 97.7% | (many diffs) |
5 | human | 644019 | CBWD6 | COBW domain containing 6 | NM_001085457.1 | 98.3% | 97.2% | (many diffs) |
6 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145356.1 | 95.1% | 95.1% | 704_705ins57 |
7 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251513.4 | 94.9% | 94.9% | 428_429ins60 |
8 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330336.1 | 94.1% | 93.6% | (many diffs) |
9 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277637.2 | 94% | 93.1% | (many diffs) |
10 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001363751.1 | 94% | 92.9% | (many diffs) |
11 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272750.1 | 93.9% | 92.9% | (many diffs) |
12 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_001291821.1 | 93.8% | 92.9% | (many diffs) |
13 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015035.1 | 93.5% | 92.4% | (many diffs) |
14 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015020.1 | 93.5% | 92.1% | (many diffs) |
15 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251514.1 | 92.6% | 92.6% | 572_573ins87 |
16 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330337.1 | 91.8% | 91.3% | (many diffs) |
17 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277639.2 | 91.8% | 90.8% | (many diffs) |
18 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272751.1 | 91.8% | 90.6% | (many diffs) |
19 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_024447653.1 | 91.5% | 90.3% | (many diffs) |
20 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015019.1 | 90% | 88.7% | (many diffs) |
21 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145355.1 | 88.8% | 86.7% | (many diffs) |
22 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015023.1 | 88.6% | 87.3% | (many diffs) |
23 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330339.1 | 87.9% | 85.5% | (many diffs) |
24 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251515.1 | 87.8% | 87.8% | 572_573ins87;617_618ins57 |
25 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_005263604.2 | 87% | 86.5% | (many diffs) |
26 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277640.2 | 87% | 86% | (many diffs) |
27 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001024916.3 | 87% | 85.8% | (many diffs) |
28 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_017014730.1 | 86.8% | 85.8% | (many diffs) |
29 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015036.1 | 86.7% | 85.5% | (many diffs) |
30 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015024.1 | 86.6% | 85.3% | (many diffs) |
31 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015021.1 | 85.4% | 84.1% | (many diffs) |
32 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517961.2 | 84% | 82% | (many diffs) |
33 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015022.1 | 83.4% | 82.1% | (many diffs) |
34 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517962.3 | 80.3% | 80.2% | 953_957delCAGAAinsG;960_961ins229 |
35 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_011510667.1 | 79.4% | 79.2% | (many diffs) |
36 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_006717116.1 | 79.3% | 78.9% | (many diffs) |
37 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_006716914.1 | 79.3% | 78.7% | (many diffs) |
38 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015025.1 | 78.8% | 77.5% | (many diffs) |
39 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746301.1 | 77.3% | (many diffs) | |
40 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014455.1 | 72.4% | 71.6% | (many diffs) |
41 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015026.1 | 71.4% | 70.7% | (many diffs) |
42 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746302.1 | 71% | (many diffs) | |
43 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746303.1 | 69.3% | (many diffs) | |
44 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014456.1 | 68% | 67.3% | (many diffs) |
45 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_024447453.1 | 68% | 67.3% | (many diffs) |
46 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015027.1 | 67.4% | 61.9% | (many diffs) |
47 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746234.1 | 65% | (many diffs) | |
48 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428504.1 | 64.9% | (many diffs) | |
49 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746352.1 | 64.3% | 1_106del;812_934del;1415_1842del | |
50 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746237.2 | 63.7% | (many diffs) | |
51 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746232.1 | 63.4% | (many diffs) | |
52 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_024452717.1 | 63.2% | 63% | (many diffs) |
53 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746299.1 | 62.7% | (many diffs) | |
54 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015030.1 | 62.6% | 57.2% | (many diffs) |
55 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517963.1 | 62.5% | 62.5% | 0_1ins444 |
56 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956769.1 | 61.7% | (many diffs) | |
57 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746297.1 | 61.5% | (many diffs) | |
58 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138473.1 | 61.3% | (many diffs) | |
59 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014457.1 | 61% | 60.2% | (many diffs) |
60 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251517.5 | 60.6% | 59.5% | (many diffs) |
61 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015028.1 | 60.4% | 59.5% | (many diffs) |
62 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_017014925.1 | 59.4% | 59.7% | 708_714delGCTCAGC;717_717delCins476 |
63 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015029.2 | 59.1% | 58.5% | (many diffs) |
64 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746300.1 | 58.8% | (many diffs) | |
65 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014458.1 | 58.5% | 58.2% | (many diffs) |
66 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428503.2 | 58.4% | (many diffs) | |
67 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138474.1 | 58.3% | (many diffs) | |
68 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746360.1 | 58.2% | (many diffs) | |
69 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956768.1 | 57.7% | (many diffs) | |
70 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746239.1 | 56.1% | (many diffs) | |
71 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_002956784.1 | 55.8% | (many diffs) | |
72 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330340.1 | 55% | 53.8% | (many diffs) |
73 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330342.1 | 55% | 53.8% | (many diffs) |
74 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014459.1 | 54.9% | 53.8% | (many diffs) |
75 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_011518706.2 | 54.8% | 53.8% | (many diffs) |
76 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746240.1 | 54.8% | (many diffs) | |
77 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015032.1 | 54.6% | 53% | (many diffs) |
78 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_024447652.1 | 54.5% | 53.1% | (many diffs) |
79 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929802.1 | 54.4% | (many diffs) | |
80 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517964.3 | 53.3% | 52.2% | (many diffs) |
81 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746238.1 | 53% | (many diffs) | |
82 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_244814.2 | 52.5% | (many diffs) | |
83 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015031.1 | 52.5% | 51.2% | (many diffs) |
84 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746359.1 | 50.1% | (many diffs) | |
85 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929803.1 | 50.1% | (many diffs) | |
86 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746353.1 | 49.7% | (many diffs) | |
87 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929804.1 | 48.6% | (many diffs) | |
88 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_922864.1 | 48.1% | (many diffs) | |
89 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014461.1 | 47.9% | 46.8% | (many diffs) |
90 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_017014732.1 | 47.9% | 46.8% | (many diffs) |
91 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746298.1 | 47.3% | (many diffs) | |
92 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_427073.2 | 46.9% | (many diffs) | |
93 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746361.1 | 46.2% | (many diffs) | |
94 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015033.1 | 46% | 44.7% | (many diffs) |
95 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746304.1 | 45.8% | (many diffs) | |
96 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746241.2 | 45% | (many diffs) | |
97 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746362.1 | 44.5% | (many diffs) | |
98 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001286835.1 | 43.5% | 39.1% | (many diffs) |
99 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746363.1 | 43.3% | (many diffs) | |
100 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_002959242.1 | 37.8% | (many diffs) | |
101 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015034.1 | 31.8% | 29.8% | (many diffs) |
102 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001286836.1 | 28.3% | 28.1% | (many diffs) |
103 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956766.1 | 26.2% | (many diffs) | |
104 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746233.1 | 25.9% | (many diffs) | |
105 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746235.1 | 25.8% | (many diffs) | |
106 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746231.1 | 25.5% | (many diffs) | |
107 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956767.1 | 22.6% | (many diffs) | |
108 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NM_146097.3 | 83.8% | 80.6% | (many diffs) |
109 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NR_033744.1 | 49.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1251
- ORF length:
- 1185
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtt accggctgtt ggatctgcgg atgaggagga ggatcctgcg gaggaggatt 121 gtcctgaatt ggttcccatt gagacgacgc aaagcgagga ggaggaaaag tctggcctcg 181 gcgccaagat cccagtcaca attatcaccg ggtatttagg tgctgggaag acaacacttc 241 tgaactatat tttgacagag caacatagta aaagagtagc ggtcatttta aatgaatttg 301 gggaaggaag tgcgctggag aaatccttag ctgtcagcca aggtggagag ctctatgaag 361 agtggctgga acttagaaac ggttgcctct gctgttcagt gaaggacagt ggccttagag 421 ctattgagaa tttgatgcaa aagaagggga aatttgatta catactgtta gagaccactg 481 gattagcaga ccctggtgca gtggcttcta tgttttgggt tgatgctgaa ttagggagtg 541 atatttatct tgatggtatc ataactattg tggattcaaa atatggatta aaacatttaa 601 cagaagagaa acctgatggc cttatcaatg aagctactag acaagttgct ttggcagatg 661 ccattctcat taataaaaca gacctggttc cagaagaaga tgtaaagaaa ttaagaacga 721 caattagatc cataaatgga ctaggacaaa tcttagaaac acaaagatca agagttgatc 781 tctctaatgt attagatctt catgcctttg atagtctctc tggaaTAAGT TTGCAGAAAA 841 AACTTCAGCA TGTGCCAGGA ACACAACCTC ACCTTGATCA GAGTATTGTT ACAATCACAT 901 TTGAAGTACC AGGAAATGCA AAGGAAGAAC ATCTTAATAT GTTTATTCAG AATCTCCTGT 961 GGGAAAAGAA TGTGAGAAAC AAGGACAATC ACTGCATGGA GGTCATAAGG CTGAAGGGAT 1021 TGGTGTCAAT CAAAGACAAA TCACAACAAG TGATTGTCCA GGGTGTCCAT GAGCTCTATG 1081 ATCTGGAGGA GACTCCAGTG AGCTGGAAGG ATGACACTGA GAGAACAAAT CGATTGGTCC 1141 TCCTTGGCAG AAATTTAGAT AAGGATATCC TTAAACAGCT GTTTATAGCT ACTGTGACAG 1201 AAACAGAAAA GCAGTGGACA ACACGTTTCC AAGAAGATCA AGTTTGTACA TACCCAACTT 1261 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1321 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1381 CTTGTGGAAA GGACGACAGA GTAATCATAT CCCTTTGTTC ACGCGTTAAG TCgacaatca 1441 acctctggat tacaaaattt gtgaaagatt