Construct: ORF ccsbBroad304_00105
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005891.1_s304c1, BRDN0000407780
- Derived from:
- ccsbBroadEn_00105
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARNTL (406)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00105
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001030272.2 | 100% | 100% | |
| 2 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001178.5 | 100% | 100% | |
| 3 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351804.1 | 100% | 100% | |
| 4 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351815.1 | 100% | 100% | |
| 5 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001297719.1 | 99.8% | 99.8% | 819_821delAGC |
| 6 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001297722.1 | 99.8% | 99.8% | 819_821delAGC |
| 7 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351824.1 | 99.8% | 99.8% | 819_821delAGC |
| 8 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351819.1 | 99.2% | 99.2% | 1410_1424del |
| 9 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017741.1 | 99.2% | 99.2% | 1410_1424del |
| 10 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351807.1 | 99% | 99% | 819_821delAGC;1413_1427del |
| 11 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351814.1 | 99% | 99% | 819_821delAGC;1413_1427del |
| 12 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520109.1 | 99% | 99% | 819_821delAGC;1413_1427del |
| 13 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351806.1 | 97.9% | 97.9% | 140_141ins39 |
| 14 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351805.1 | 97.7% | 97.7% | 140_141ins39;780_782delAGC |
| 15 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351809.1 | 93.8% | 91.9% | (many diffs) |
| 16 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351812.1 | 93.8% | 91.9% | (many diffs) |
| 17 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_024448522.1 | 93.8% | 91.9% | (many diffs) |
| 18 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520107.3 | 93.5% | 93.5% | 1_129del |
| 19 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017739.2 | 93.4% | 93.4% | 1_129del;948_950delAGC |
| 20 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520105.3 | 92.8% | 92.8% | 1_129del;1539_1553del |
| 21 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001030273.2 | 92.8% | 92.4% | (many diffs) |
| 22 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351818.1 | 92.8% | 92.4% | (many diffs) |
| 23 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017748.1 | 92.8% | 92.4% | (many diffs) |
| 24 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017738.2 | 92.7% | 92.7% | 1_129del;948_950delAGC;1542_1556del |
| 25 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001297724.1 | 92.6% | 92.3% | (many diffs) |
| 26 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351808.1 | 92.6% | 92.3% | (many diffs) |
| 27 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351816.1 | 92.6% | 92.3% | (many diffs) |
| 28 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351820.1 | 92.6% | 92.3% | (many diffs) |
| 29 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351821.1 | 92.6% | 92.3% | (many diffs) |
| 30 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351822.1 | 92.6% | 92.3% | (many diffs) |
| 31 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351813.1 | 92% | 91.7% | (many diffs) |
| 32 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_017017744.1 | 92% | 91.7% | (many diffs) |
| 33 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351823.1 | 91.9% | 91.6% | (many diffs) |
| 34 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_006718234.1 | 91.9% | 91.6% | (many diffs) |
| 35 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XM_011520111.1 | 91.9% | 91.6% | (many diffs) |
| 36 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351810.1 | 81.2% | 81.2% | 817_818ins351 |
| 37 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351817.1 | 81.2% | 81.2% | 817_818ins351 |
| 38 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147786.1 | 64.9% | 1_404del;1727_1821del;2375_2887del | |
| 39 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147785.1 | 64.8% | (many diffs) | |
| 40 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147788.1 | 63.7% | 1_459del;1782_1876del;2430_2942del | |
| 41 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147791.1 | 63.3% | (many diffs) | |
| 42 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147790.1 | 63.3% | (many diffs) | |
| 43 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147787.1 | 61.6% | (many diffs) | |
| 44 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XR_001747876.2 | 60.7% | (many diffs) | |
| 45 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XR_002957147.1 | 60.4% | 1_602del;1269_1381del;2591_3103del | |
| 46 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NR_147789.1 | 60.3% | (many diffs) | |
| 47 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | NM_001351811.1 | 59.9% | 59.9% | 0_1ins750;69_71delAGC |
| 48 | human | 406 | ARNTL | aryl hydrocarbon receptor n... | XR_002957148.1 | 58% | (many diffs) | |
| 49 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_017321949.1 | 91.3% | 98.4% | (many diffs) |
| 50 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_017321950.1 | 91.3% | 98.4% | (many diffs) |
| 51 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | NM_007489.4 | 91.1% | 98.2% | (many diffs) |
| 52 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507253.2 | 90.5% | 97.6% | (many diffs) |
| 53 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507252.2 | 90.4% | 97.4% | (many diffs) |
| 54 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507251.2 | 90.2% | 97.3% | (many diffs) |
| 55 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507250.2 | 90.1% | 97.1% | (many diffs) |
| 56 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507249.2 | 89.5% | 96.5% | (many diffs) |
| 57 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507245.2 | 89.4% | 96.3% | (many diffs) |
| 58 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507246.3 | 89.4% | 96.3% | (many diffs) |
| 59 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507247.3 | 89.4% | 96.3% | (many diffs) |
| 60 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_006507248.2 | 89.4% | 96.3% | (many diffs) |
| 61 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XM_011241656.2 | 89.4% | 96.3% | (many diffs) |
| 62 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | NM_001243048.1 | 89.1% | 96.1% | (many diffs) |
| 63 | mouse | 11865 | Arntl | aryl hydrocarbon receptor n... | XR_001785467.1 | 56.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1941
- ORF length:
- 1875
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggc agaccagaga atggacattt cttcaaccat cagtgatttc atgtccccgg 121 gccccaccga cctgctttcc agctctcttg gtaccagtgg tgtggattgc aaccgcaaac 181 ggaaaggcag ctccactgac taccaagaaa gcatggacac agacaaagat gaccctcatg 241 gaaggttaga atatacagaa caccaaggaa ggataaaaaa tgcaagggaa gctcacagtc 301 agattgaaaa gcggcgtcgg gataaaatga acagttttat agatgaattg gcttctttgg 361 taccaacatg caacgcaatg tccaggaaat tagataaact tactgtgcta aggatggctg 421 ttcagcacat gaaaacatta agaggtgcca ccaatccata cacagaagca aactacaaac 481 caacttttct atcagacgat gaattgaaac acctcattct cagggcagca gatggatttt 541 tgtttgtcgt aggatgtgac cgagggaaga tactctttgt ctcagagtct gtcttcaaga 601 tcctcaacta cagccagaat gatctgattg gtcagagttt gtttgactac ctgcatccta 661 aagatattgc caaagtcaag gagcagctct cctcctctga caccgcaccc cgggagcggc 721 tcatagatgc aaaaactgga cttccagtta aaacagatat aacccctggg ccatctcgat 781 tatgttctgg agcacgacgt tctttcttct gtaggatgaa gtgtaacagg ccttcagtaa 841 aggttgaaga caaggacttc ccctctacct gctcaaagaa aaaagatcga aaaagcttct 901 gcacaatcca cagcacaggc tatttgaaaa gctggccacc cacaaagatg gggctggatg 961 aagacaacga accagacaat gaggggtgta acctcagctg cctcgtcgca attggacgac 1021 tgcattctca tgtagttcca caaccagtga acggggaaat cagggtgaaa tctatggaat 1081 atgtttctcg gcacgcgata gatggaaagt ttgtttttgt agaccagagg gcaacagcta 1141 ttttggcata tttaccacaa gaacttctag gcacatcgtg ttatgaatat tttcaccaag 1201 atgacatagg acatcttgca gaatgtcata ggcaagtttt acagacgaga gaaaaaatta 1261 caactaattg ctataaattt aaaaTCAAAG ATGGTTCTTT TATCACACTA CGGAGTCGAT 1321 GGTTCAGTTT CATGAACCCT TGGACCAAGG AAGTAGAATA TATTGTCTCA ACTAACACTG 1381 TTGTTTTAGC CAACGTCCTG GAAGGCGGGG ACCCAACCTT CCCACAGCTC ACAGCATCCC 1441 CCCACAGCAT GGACAGCATG CTGCCCTCTG GAGAAGGTGG CCCAAAGAGG ACCCACCCCA 1501 CTGTTCCAGG GATTCCAGGG GGAACCCGGG CTGGGGCAGG AAAAATAGGC CGAATGATTG 1561 CTGAGGAAAT CATGGAAATC CACAGGATAA GAGGGTCATC GCCTTCTAGC TGTGGCTCCA 1621 GCCCATTGAA CATCACGAGT ACGCCTCCCC CTGATGCCTC TTCTCCAGGA GGCAAGAAGA 1681 TTTTAAATGG AGGGACTCCA GACATTCCTT CCAGTGGCCT ACTATCAGGC CAGGCTCAGG 1741 AGAACCCAGG TTATCCATAT TCTGATAGTT CTTCTATTCT TGGTGAGAAC CCCCACATAG 1801 GTATAGACAT GATTGACAAC GACCAAGGAT CAAGTAGTCC CAGTAATGAT GAGGCAGCAA 1861 TGGCTGTCAT CATGAGCCTC TTGGAAGCAG ATGCTGGACT GGGTGGCCCT GTTGACTTTA 1921 GTGACTTGCC ATGGCCGCTG TACCCAACTT TCTTGTACaa agtggttggt aagcctatcc 1981 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 2041 ttaagtcgac aatcaacctc tggatta