Construct: ORF ccsbBroad304_00105

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005891.1_s304c1, BRDN0000407780
Derived from:
ccsbBroadEn_00105
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARNTL (406)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00105
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 406 ARNTL aryl hydrocarbon receptor n... NM_001030272.2 100% 100%
2 human 406 ARNTL aryl hydrocarbon receptor n... NM_001178.5 100% 100%
3 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351804.1 100% 100%
4 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351815.1 100% 100%
5 human 406 ARNTL aryl hydrocarbon receptor n... NM_001297719.1 99.8% 99.8% 819_821delAGC
6 human 406 ARNTL aryl hydrocarbon receptor n... NM_001297722.1 99.8% 99.8% 819_821delAGC
7 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351824.1 99.8% 99.8% 819_821delAGC
8 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351819.1 99.2% 99.2% 1410_1424del
9 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017741.1 99.2% 99.2% 1410_1424del
10 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351807.1 99% 99% 819_821delAGC;1413_1427del
11 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351814.1 99% 99% 819_821delAGC;1413_1427del
12 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520109.1 99% 99% 819_821delAGC;1413_1427del
13 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351806.1 97.9% 97.9% 140_141ins39
14 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351805.1 97.7% 97.7% 140_141ins39;780_782delAGC
15 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351809.1 93.8% 91.9% (many diffs)
16 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351812.1 93.8% 91.9% (many diffs)
17 human 406 ARNTL aryl hydrocarbon receptor n... XM_024448522.1 93.8% 91.9% (many diffs)
18 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520107.3 93.5% 93.5% 1_129del
19 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017739.2 93.4% 93.4% 1_129del;948_950delAGC
20 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520105.3 92.8% 92.8% 1_129del;1539_1553del
21 human 406 ARNTL aryl hydrocarbon receptor n... NM_001030273.2 92.8% 92.4% (many diffs)
22 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351818.1 92.8% 92.4% (many diffs)
23 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017748.1 92.8% 92.4% (many diffs)
24 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017738.2 92.7% 92.7% 1_129del;948_950delAGC;1542_1556del
25 human 406 ARNTL aryl hydrocarbon receptor n... NM_001297724.1 92.6% 92.3% (many diffs)
26 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351808.1 92.6% 92.3% (many diffs)
27 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351816.1 92.6% 92.3% (many diffs)
28 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351820.1 92.6% 92.3% (many diffs)
29 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351821.1 92.6% 92.3% (many diffs)
30 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351822.1 92.6% 92.3% (many diffs)
31 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351813.1 92% 91.7% (many diffs)
32 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017744.1 92% 91.7% (many diffs)
33 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351823.1 91.9% 91.6% (many diffs)
34 human 406 ARNTL aryl hydrocarbon receptor n... XM_006718234.1 91.9% 91.6% (many diffs)
35 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520111.1 91.9% 91.6% (many diffs)
36 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351810.1 81.2% 81.2% 817_818ins351
37 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351817.1 81.2% 81.2% 817_818ins351
38 human 406 ARNTL aryl hydrocarbon receptor n... NR_147786.1 64.9% 1_404del;1727_1821del;2375_2887del
39 human 406 ARNTL aryl hydrocarbon receptor n... NR_147785.1 64.8% (many diffs)
40 human 406 ARNTL aryl hydrocarbon receptor n... NR_147788.1 63.7% 1_459del;1782_1876del;2430_2942del
41 human 406 ARNTL aryl hydrocarbon receptor n... NR_147791.1 63.3% (many diffs)
42 human 406 ARNTL aryl hydrocarbon receptor n... NR_147790.1 63.3% (many diffs)
43 human 406 ARNTL aryl hydrocarbon receptor n... NR_147787.1 61.6% (many diffs)
44 human 406 ARNTL aryl hydrocarbon receptor n... XR_001747876.2 60.7% (many diffs)
45 human 406 ARNTL aryl hydrocarbon receptor n... XR_002957147.1 60.4% 1_602del;1269_1381del;2591_3103del
46 human 406 ARNTL aryl hydrocarbon receptor n... NR_147789.1 60.3% (many diffs)
47 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351811.1 59.9% 59.9% 0_1ins750;69_71delAGC
48 human 406 ARNTL aryl hydrocarbon receptor n... XR_002957148.1 58% (many diffs)
49 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_017321949.1 91.3% 98.4% (many diffs)
50 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_017321950.1 91.3% 98.4% (many diffs)
51 mouse 11865 Arntl aryl hydrocarbon receptor n... NM_007489.4 91.1% 98.2% (many diffs)
52 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507253.2 90.5% 97.6% (many diffs)
53 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507252.2 90.4% 97.4% (many diffs)
54 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507251.2 90.2% 97.3% (many diffs)
55 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507250.2 90.1% 97.1% (many diffs)
56 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507249.2 89.5% 96.5% (many diffs)
57 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507245.2 89.4% 96.3% (many diffs)
58 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507246.3 89.4% 96.3% (many diffs)
59 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507247.3 89.4% 96.3% (many diffs)
60 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507248.2 89.4% 96.3% (many diffs)
61 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_011241656.2 89.4% 96.3% (many diffs)
62 mouse 11865 Arntl aryl hydrocarbon receptor n... NM_001243048.1 89.1% 96.1% (many diffs)
63 mouse 11865 Arntl aryl hydrocarbon receptor n... XR_001785467.1 56.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1941
ORF length:
1875
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agaccagaga atggacattt cttcaaccat cagtgatttc atgtccccgg
121gccccaccga cctgctttcc agctctcttg gtaccagtgg tgtggattgc aaccgcaaac
181ggaaaggcag ctccactgac taccaagaaa gcatggacac agacaaagat gaccctcatg
241gaaggttaga atatacagaa caccaaggaa ggataaaaaa tgcaagggaa gctcacagtc
301agattgaaaa gcggcgtcgg gataaaatga acagttttat agatgaattg gcttctttgg
361taccaacatg caacgcaatg tccaggaaat tagataaact tactgtgcta aggatggctg
421ttcagcacat gaaaacatta agaggtgcca ccaatccata cacagaagca aactacaaac
481caacttttct atcagacgat gaattgaaac acctcattct cagggcagca gatggatttt
541tgtttgtcgt aggatgtgac cgagggaaga tactctttgt ctcagagtct gtcttcaaga
601tcctcaacta cagccagaat gatctgattg gtcagagttt gtttgactac ctgcatccta
661aagatattgc caaagtcaag gagcagctct cctcctctga caccgcaccc cgggagcggc
721tcatagatgc aaaaactgga cttccagtta aaacagatat aacccctggg ccatctcgat
781tatgttctgg agcacgacgt tctttcttct gtaggatgaa gtgtaacagg ccttcagtaa
841aggttgaaga caaggacttc ccctctacct gctcaaagaa aaaagatcga aaaagcttct
901gcacaatcca cagcacaggc tatttgaaaa gctggccacc cacaaagatg gggctggatg
961aagacaacga accagacaat gaggggtgta acctcagctg cctcgtcgca attggacgac
1021tgcattctca tgtagttcca caaccagtga acggggaaat cagggtgaaa tctatggaat
1081atgtttctcg gcacgcgata gatggaaagt ttgtttttgt agaccagagg gcaacagcta
1141ttttggcata tttaccacaa gaacttctag gcacatcgtg ttatgaatat tttcaccaag
1201atgacatagg acatcttgca gaatgtcata ggcaagtttt acagacgaga gaaaaaatta
1261caactaattg ctataaattt aaaaTCAAAG ATGGTTCTTT TATCACACTA CGGAGTCGAT
1321GGTTCAGTTT CATGAACCCT TGGACCAAGG AAGTAGAATA TATTGTCTCA ACTAACACTG
1381TTGTTTTAGC CAACGTCCTG GAAGGCGGGG ACCCAACCTT CCCACAGCTC ACAGCATCCC
1441CCCACAGCAT GGACAGCATG CTGCCCTCTG GAGAAGGTGG CCCAAAGAGG ACCCACCCCA
1501CTGTTCCAGG GATTCCAGGG GGAACCCGGG CTGGGGCAGG AAAAATAGGC CGAATGATTG
1561CTGAGGAAAT CATGGAAATC CACAGGATAA GAGGGTCATC GCCTTCTAGC TGTGGCTCCA
1621GCCCATTGAA CATCACGAGT ACGCCTCCCC CTGATGCCTC TTCTCCAGGA GGCAAGAAGA
1681TTTTAAATGG AGGGACTCCA GACATTCCTT CCAGTGGCCT ACTATCAGGC CAGGCTCAGG
1741AGAACCCAGG TTATCCATAT TCTGATAGTT CTTCTATTCT TGGTGAGAAC CCCCACATAG
1801GTATAGACAT GATTGACAAC GACCAAGGAT CAAGTAGTCC CAGTAATGAT GAGGCAGCAA
1861TGGCTGTCAT CATGAGCCTC TTGGAAGCAG ATGCTGGACT GGGTGGCCCT GTTGACTTTA
1921GTGACTTGCC ATGGCCGCTG TACCCAACTT TCTTGTACaa agtggttggt aagcctatcc
1981ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
2041ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)

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