Transcript: Mouse XM_006507249.2

PREDICTED: Mus musculus aryl hydrocarbon receptor nuclear translocator-like (Arntl), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arntl (11865)
Length:
2941
CDS:
521..2434

Additional Resources:

NCBI RefSeq record:
XM_006507249.2
NBCI Gene record:
Arntl (11865)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006507249.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095056 CGACACGCAATAGATGGGAAA pLKO.1 1565 CDS 100% 4.050 5.670 N Arntl n/a
2 TRCN0000095054 CCATTGATACAAGTCAATCTA pLKO.1 2565 3UTR 100% 0.563 0.450 N Arntl n/a
3 TRCN0000262534 TCTTCAAGATCCTCAATTATA pLKO_005 1068 CDS 100% 15.000 10.500 N Arntl n/a
4 TRCN0000095058 CCCTCATGGAAGGTTAGAATA pLKO.1 709 CDS 100% 13.200 9.240 N Arntl n/a
5 TRCN0000282305 GACGAACTGAAACACCTAATT pLKO_005 974 CDS 100% 13.200 9.240 N Arntl n/a
6 TRCN0000262535 ACATAGGCATCGATATGATAG pLKO_005 2286 CDS 100% 10.800 7.560 N Arntl n/a
7 TRCN0000095055 CGCGGAGGAAATCATGGAAAT pLKO.1 2050 CDS 100% 10.800 7.560 N Arntl n/a
8 TRCN0000095057 GCCAAAGTTAAGGAACAGCTA pLKO.1 1145 CDS 100% 2.640 1.848 N Arntl n/a
9 TRCN0000282303 GCAGTATCAAAGTGCATTAAT pLKO_005 2461 3UTR 100% 15.000 9.000 N Arntl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006507249.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00105 pDONR223 100% 89.5% 96.5% None (many diffs) n/a
2 ccsbBroad304_00105 pLX_304 35.1% 89.5% 96.5% V5 (many diffs) n/a
3 TRCN0000481576 CTCTCTCTTCCCAACTTCCTAGGC pLX_317 23.2% 89.5% 96.5% V5 (many diffs) n/a
4 ccsbBroadEn_15360 pDONR223 0% 83.4% 89.3% None (many diffs) n/a
5 ccsbBroad304_15360 pLX_304 0% 83.4% 89.3% V5 (many diffs) n/a
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