Transcript: Human NM_001351809.1

Homo sapiens aryl hydrocarbon receptor nuclear translocator like (ARNTL), transcript variant 15, mRNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
ARNTL (406)
Length:
2919
CDS:
580..2409

Additional Resources:

NCBI RefSeq record:
NM_001351809.1
NBCI Gene record:
ARNTL (406)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001351809.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000331079 AGAACCCAGGTTATCCATATT pLKO_005 2207 CDS 100% 13.200 18.480 N ARNTL n/a
2 TRCN0000331078 GCAACAGCTATAGTATCAAAG pLKO_005 2428 3UTR 100% 10.800 15.120 N ARNTL n/a
3 TRCN0000019095 GCACGCGATAGATGGAAAGTT pLKO.1 1557 CDS 100% 5.625 7.875 N ARNTL n/a
4 TRCN0000331011 GCACGCGATAGATGGAAAGTT pLKO_005 1557 CDS 100% 5.625 7.875 N ARNTL n/a
5 TRCN0000019097 GCAGAATGTCATAGGCAAGTT pLKO.1 1684 CDS 100% 4.950 6.930 N ARNTL n/a
6 TRCN0000331012 GCAGAATGTCATAGGCAAGTT pLKO_005 1684 CDS 100% 4.950 6.930 N ARNTL n/a
7 TRCN0000095058 CCCTCATGGAAGGTTAGAATA pLKO.1 696 CDS 100% 13.200 10.560 N Arntl n/a
8 TRCN0000331014 CTTCTAGGCACATCGTGTTAT pLKO_005 1630 CDS 100% 13.200 10.560 N ARNTL n/a
9 TRCN0000019096 CAACGCAATGTCCAGGAAATT pLKO.1 834 CDS 100% 13.200 9.240 N ARNTL n/a
10 TRCN0000019094 GCCGAATGATTGCTGAGGAAA pLKO.1 2015 CDS 100% 4.950 3.465 N ARNTL n/a
11 TRCN0000095054 CCATTGATACAAGTCAATCTA pLKO.1 2541 3UTR 100% 0.563 0.788 N Arntl n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001351809.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15360 pDONR223 0% 95.7% 95.7% None 1_78del n/a
2 ccsbBroad304_15360 pLX_304 0% 95.7% 95.7% V5 1_78del n/a
3 ccsbBroadEn_00105 pDONR223 100% 93.8% 91.9% None (many diffs) n/a
4 ccsbBroad304_00105 pLX_304 35.1% 93.8% 91.9% V5 (many diffs) n/a
5 TRCN0000481576 CTCTCTCTTCCCAACTTCCTAGGC pLX_317 23.2% 93.8% 91.9% V5 (many diffs) n/a
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