Construct: ORF ccsbBroad304_00379
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013253.1_s304c1, BRDN0000403506
- Derived from:
- ccsbBroadEn_00379
- DNA Barcode:
- None
- Epitope Tag:
- V5 (sequence mutation detected)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1E (1454)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_00379
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102800317 | TPTEP2-CSNK1E | TPTEP2-CSNK1E readthrough | NM_001289912.2 | 98.7% | 98.3% | (many diffs) |
| 2 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_001894.4 | 98.7% | 98.3% | (many diffs) |
| 3 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_152221.3 | 98.7% | 98.3% | (many diffs) |
| 4 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_001289898.1 | 89.6% | 97.1% | (many diffs) |
| 5 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_013767.6 | 89.6% | 97.1% | (many diffs) |
| 6 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316657.1 | 89.6% | 97.1% | (many diffs) |
| 7 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316658.1 | 89.6% | 97.1% | (many diffs) |
| 8 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316659.1 | 89.6% | 97.1% | (many diffs) |
| 9 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_006521043.3 | 85.4% | 70.6% | (many diffs) |
| 10 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245649.1 | 85.4% | 70.6% | (many diffs) |
| 11 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245650.2 | 85.4% | 70.6% | (many diffs) |
| 12 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245651.1 | 85.4% | 70.6% | (many diffs) |
| 13 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245652.2 | 85.4% | 70.6% | (many diffs) |
| 14 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245653.2 | 85.4% | 70.6% | (many diffs) |
| 15 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245654.2 | 85.4% | 70.6% | (many diffs) |
| 16 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_001289899.1 | 76.3% | 75.8% | (many diffs) |
| 17 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316660.1 | 76.3% | 75.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1308
- ORF length:
- 1242
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga gctacgtgtg gggaacaagt accgcctggg acggaagatc gggagcgggt 121 ccttcggaga tatctacctg ggtgccaaca tcgcctctgg tgaggaagtc gccatcaagc 181 tggagtgtgt gaagacaaag cacccccagc tgcacatcga gagcaagttc tacaagatga 241 tgcagggtgg cgtggggatc ccgtccatca agtggtgcgg agctgagggc gactacaacg 301 tgatggtcat ggagctgctg gggcctagcc tcgaggacct gttcaacttc tgttcccgca 361 aattcagcct caagacggtg ctgctcttgg ccgaccagat gatcagccgc atcgagtata 421 tccactccaa gaacttcatc caccgggacg tcaagcccga caacttcctc atggggctgg 481 ggaagaaggg caacctggtc tacatcatcg acttcggcct ggccaagaag taccgggacg 541 cccgcaccca ccagcacatt ccctaccggg aaaacaagaa cctgaccggc acggcccgct 601 acgcttccat caacacgcac ctgggcattg agcaaagccg tcgagatgac ctggagagcc 661 tgggctacgt gctcatgtac ttcaacctgg gctccctgcc ctggcagggg ctcaaagcag 721 ccaccaagcg ccagaagtat gaacggatca gcgagaagaa gatgtcaacg cccatcgagg 781 tcctctgcaa aggctatccc tccgaattct caacatacct caacttctgc cgctccctgc 841 ggtttgacga caagcccgac tactcttacc tacgtcagct cttccgcaac ctcttccacc 901 ggcagggctt ctcctatgac tacgtctttg actggaacat gctgaaattc ggtgcagccc 961 ggaatcccga ggatgtggac cgggagcggc gagaacacga acgcgaggag aggatggggc 1021 agctacgggg gtccgcgacc cgagccctgc cccctggccc acccacgggg gccactgcca 1081 accggctccg cagtgccgcc gagcccgtgg cttccacgcc agcctcccgc atccagccgg 1141 ctggcaatac ttctcccaga gcgatctcgc gggtcgaccg ggagaggaag gtgagtatga 1201 ggctgcacag gggtgcgccc gccaacgtct cctcctcaga cctcactggg cggcaagagg 1261 tctcccggat cccagcctca cagacaGGAC CGCCAGTATT CCGTCTCTCC TTAGTGTGGA 1321 TTGGGGTTCG TCCGTTAGCC GTCAAATAAA GCTTCTTCTT ATTTGTGGTA ATGATCTAGA 1381 GGCCGAGGCG TGTCTGCCTG GGCATAGGTA AAATTTATTA CTCAGTCAAG GGGAGTAGAT 1441 GGGCGCAACT GCGTGGAATA AGTGGTGGGA TGGGCGGAGG TAGGTGCGTG ATAGCTAGAC 1501 CCAAAACATG ATAAGATACA TTGATGAGTT TGGACAAACC GCAACTAGAA GGCAGTGAAA 1561 AAAAATGTTT TATTTGTGAA ATTTGTGATG CTATTGCTTT ATTTGTAACC ATTATAAGCT 1621 GCAATAAACA AGTTCCTCTC ACTCTTTGAT ATTCATTTCT GTGCAAGTTA TGAGTGGGGA 1681 ATAATAAGAT GACATGAACT ACTATACGTA CTGCTAGAGA TTTTCCACAC TGACTAAAAG 1741 GGTCTGAGGG ATCTCTAGTT ACCAGAGTCA CACAACAGAC GGGCACACAC TACTTGAAGC 1801 ACTCAAGGCA AGCTTTATTG AGGCTTAAGC AGTGGGTTCC CTAGTTAGCC AGAGAGCTCC 1861 CAGGCTCAGA TCTGGTCTAA CCAGAGAGAC CCGTTTATGT ATCGAGCTAG GCACTTAAAT 1921 ACAATATCTA TGCAATGGGG CAATTCAGTG GTTCGTCCAA TCCATGTCAG ACCCGTCTGT 1981 TGCCTTCCTA ATAAGGCACG ATCGTACCAC CTTACTTCCA CCAATCGGCA TGCACGGTGC 2041 TTTTTCTCTC GTTGTAAGGC ATGTTGCTAA CTCATCGTTG CCATGTTACA AGACTACAAG 2101 AATATTGGAT AATTCTACAT TAAGCTTCCA GCTCCAGCTT GTGTTCCCTT TAGTGAGGGT 2161 AAATGCGCGC GTGGGTATTC GTGCCC