Construct: ORF ccsbBroad304_01600

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008240.1_s304c1, BRDN0000406936
Derived from:
ccsbBroadEn_01600
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SSRP1 (6749)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01600
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6749 SSRP1 structure specific recognit... NM_003146.3 100% 100%
2 human 6749 SSRP1 structure specific recognit... XM_024448665.1 88.1% 88.1% 346_630del
3 human 6749 SSRP1 structure specific recognit... XM_024448666.1 88.1% 88.1% 346_630del
4 human 6749 SSRP1 structure specific recognit... XM_017018180.1 84.1% 84.1% 1_402del
5 human 6749 SSRP1 structure specific recognit... XM_024448664.1 75.5% 75.5% 1_402del;748_1032del
6 human 6749 SSRP1 structure specific recognit... XM_024448667.1 48.6% 45.3% (many diffs)
7 mouse 20833 Ssrp1 structure specific recognit... NM_001136081.2 89.4% 97.6% (many diffs)
8 mouse 20833 Ssrp1 structure specific recognit... NM_182990.4 89.4% 97.6% (many diffs)
9 mouse 20833 Ssrp1 structure specific recognit... XM_006499070.1 89.4% 97.6% (many diffs)
10 mouse 20833 Ssrp1 structure specific recognit... XM_011239405.1 55.8% 60.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2193
ORF length:
2127
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agagacactg gagttcaacg acgtctatca ggaggtgaaa ggttccatga
121atgatggtcg actgaggttg agccgtcagg gcatcatctt caagaatagc aagacaggca
181aagtggacaa catccaggct ggggagttaa cagaaggtat ctggcgccgt gttgctctgg
241gccatggact taaactgctt acaaagaatg gccatgtcta caagtatgat ggcttccgag
301aatcggagtt tgagaaactc tctgatttct tcaaaactca ctatcgcctt gagctaatgg
361agaaggacct ttgtgtgaag ggctggaact gggggacagt gaaatttggt gggcagctgc
421tttcctttga cattggtgac cagccagtct ttgagatacc cctcagcaat gtgtcccagt
481gcaccacagg caagaatgag gtgacactgg aattccacca aaacgatgac gcagaggtgt
541ctctcatgga ggtgcgcttc tacgtcccac ccacccagga ggatggtgtg gaccctgttg
601aggcctttgc ccagaatgtg ttgtcaaagg cggatgtaat ccaggccacg ggagatgcca
661tctgcatctt ccgggagctg cagtgtctga ctcctcgtgg tcgttatgac attcggatct
721accccacctt tctgcacctg catggcaaga cctttgacta caagatcccc tacaccacag
781tactgcgtct gtttttgtta ccccacaagg accagcgcca gatgttcttt gtgatcagcc
841tggatccccc aatcaagcaa ggccaaactc gctaccactt cctgatcctc ctcttctcca
901aggacgagga catttcgttg actctgaaca tgaacgagga agaagtggag aagcgctttg
961agggtcggct caccaagaac atgtcaggat ccctctatga gatggtcagc cgggtcatga
1021aagcactggt aaaccgcaag atcacagtgc caggcaactt ccaagggcac tcaggggccc
1081agtgcattac ctgttcctac aaggcaagct caggactgct ctacccgctg gagcggggct
1141tcatctacgt ccacaagcca cctgtgcaca tccgcttcga tgagatctcc tttgtcaact
1201ttgctcgtgg taccactact actcgttcct ttgactttga aattgagacc aagcagggca
1261ctcagtatac cttcagcagc attgagaggg aggagtacgg gaaactgttt gattttgtca
1321acgcgaaaaa gctcaacatc aaaaaccgag gattgaaaga gggcatgaac ccaagctacg
1381atgaatatgc tgactctgat gaggaccagc atgatgccta cttggagagg atgaaggagg
1441aaggcaagat ccgggaggag aatgccaatg acagcagcga tgactcagga gaagaaaccg
1501atgagtcatt caacccaggt gaagaggagg aagatgtggc agaggagttt gacagcaacg
1561cctctgccag ctcctccagt aatgagggtg acagtgaccg ggatgagaag aagcggaaac
1621agctcaaaaa ggccaagatg gccaaggacc gcaagagccg caagaagcct gtggaggtga
1681agaagggcaa agaccccaat gcccccaaga ggcccatgtc tgcatacatg ctgtggctca
1741atgccagccg agagaagatc aagtcagacc atcctggcat cagcatcacg gatctttcca
1801agaaggcagg cgagatctgg aagggaatgt ccaaagagaa gaaagaggag tgggatcgca
1861aggctgagga tgccaggagg gactatgaaa aagccatgaa agaatatgaa gggggccgag
1921gcgagtcttc taagagggac aagtcaaaga agaagaagaa agtaaaggta aagatggaaa
1981agaaatccac gccctctagg ggctcatcat ccaagtcgtc ctcaaggcag ctaagcgaga
2041gcttcaagag caaagagttt gtgtctagtg atgagagctc ttcgggagag aacaagagca
2101aaaagaagag gaggaggagc gaggactctg aagaagaaga actagccagt actcccccca
2161gctcagagga ctcagcgtca ggatccgatg agtacccaac tttcttgtac aaagtggttg
2221gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
2281accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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