Construct: ORF ccsbBroad304_01719

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009474.1_s304c1, BRDN0000409437
Derived from:
ccsbBroadEn_01719
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EIPR1 (7260)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01719
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7260 EIPR1 EARP complex and GARP compl... NM_003310.4 100% 100%
2 human 7260 EIPR1 EARP complex and GARP compl... XM_011510385.2 95.6% 93% (many diffs)
3 human 7260 EIPR1 EARP complex and GARP compl... NM_001330530.2 93.4% 93.4% 260_340del
4 human 7260 EIPR1 EARP complex and GARP compl... XM_011510383.3 89.6% 87.2% (many diffs)
5 human 7260 EIPR1 EARP complex and GARP compl... XM_006711893.2 74.1% 74.1% 0_1ins300
6 human 7260 EIPR1 EARP complex and GARP compl... XM_017004818.2 74.1% 74.1% 0_1ins300
7 human 7260 EIPR1 EARP complex and GARP compl... NM_001330531.2 62.7% 62.7% 0_1ins432
8 mouse 380752 Tssc1 tumor suppressing subtransf... NM_201357.2 87% 93% (many diffs)
9 mouse 380752 Tssc1 tumor suppressing subtransf... XM_006515120.3 84.1% 90% (many diffs)
10 mouse 380752 Tssc1 tumor suppressing subtransf... XM_006515121.3 66.7% 68% (many diffs)
11 mouse 380752 Tssc1 tumor suppressing subtransf... XM_006515122.1 64.1% 68.9% (many diffs)
12 mouse 380752 Tssc1 tumor suppressing subtransf... XM_011243879.2 62.1% 66.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1227
ORF length:
1161
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ggacgatgca ccagtgatct acgggctgga gttccaggca cgtgccttaa
121cacctcaaac tgcagaaaca gatgccattc ggtttttggt tgggacgcag tctcttaaat
181atgataatca gatccatatc atagattttg acgatgaaaa caacattata aataaaaatg
241tcctcctcca tcaagcgggt gaaatctggc atattagcgc tagccctgca gacagaggtg
301tgctgacgac ctgctacaac agaacttcag acagcaaagt cctgacatgt gcagccgtgt
361ggaggatgcc gaaggaattg gaatcaggca gccacgagtc ccctgatgat tcatccagca
421ctgcacagac cctggagctg ctctgtcacc ttgacaacac agcccatggc aacatggcct
481gtgtcgtgtg ggagccaatg ggagatggga agaaaatcat ttccttggct gataaccata
541tcctgctgtg ggatttacag gaaagctcga gccaggctgt gctggccagc tcagcgtccc
601tggaagggaa gggacaactg aagttcacct caggacggtg gagcccacat cataactgca
661cccaggtggc cacagcgaac gacaccaccc tccgtggctg ggacacccgg agcatgagcc
721agatctactg catagagaat gcccacggac agctggtgcg ggaccttgac tttaatccca
781ataagcagta ctacttggcc agctgcggag acgactgtaa ggtgaagttc tgggacaccc
841gaaatgtcac cgaacccgtg aagaccctgg aggagcactc ccactgggtg tggaacgtcc
901gctacaacca ctctcatgac cagctggtcc tcacgggcag cagtgacagc agagtcatcc
961tttccaacat ggtgtccatc tcgtcggagc ccttcggcca cttggtagac gacgatgaca
1021tcagtgacca ggaggaccac cgttctgaag agaagagcaa ggagcccctg caggacaacg
1081tgatcgccac ctacgaggag cacgaggaca gcgtctatgc cgtggactgg tcctcggctg
1141acccgtggct gtttgcctcc ctgagctatg acgggaggct cgtgatcaac agggtgccca
1201gggccctgaa gtaccacatc ctgctatgcc caactttctt gtacaaagtg gttggtaagc
1261ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1321ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)