Construct: ORF ccsbBroad304_03390

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009022.1_s304c1, BRDN0000404068
Derived from:
ccsbBroadEn_03390
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLIC5 (53405)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03390
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 53405 CLIC5 chloride intracellular chan... NM_016929.5 100% 100%
2 human 53405 CLIC5 chloride intracellular chan... NM_001370649.1 84.4% 84.4% 0_1ins117
3 human 53405 CLIC5 chloride intracellular chan... NM_001256023.1 79.6% 75.9% (many diffs)
4 human 53405 CLIC5 chloride intracellular chan... NM_001114086.2 58.7% 58.2% (many diffs)
5 human 53405 CLIC5 chloride intracellular chan... NM_001370650.1 58.7% 58.2% (many diffs)
6 human 53405 CLIC5 chloride intracellular chan... XM_011514692.3 47.2% 45.8% (many diffs)
7 human 53405 CLIC5 chloride intracellular chan... XM_011514694.3 36.7% 30.7% (many diffs)
8 human 53405 CLIC5 chloride intracellular chan... XR_926258.3 15.2% (many diffs)
9 human 53405 CLIC5 chloride intracellular chan... NR_045672.1 9.4% (many diffs)
10 mouse 224796 Clic5 chloride intracellular chan... NM_172621.2 90% 96.4% (many diffs)
11 mouse 224796 Clic5 chloride intracellular chan... XM_006524135.3 45.5% 47.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
819
ORF length:
753
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac agactcggcg acagctaacg gggacgacag ggaccccgag atcgagctct
121ttgtgaaggc tggaatcgat ggagaaagca tcggcaactg tcctttctct cagcgcctct
181tcatgatcct ctggctgaaa ggagtcgtgt tcaatgtcac cactgtggat ctgaaaagaa
241agccagctga cctgcacaac ctagcccccg gcacgcaccc gcccttcctg accttcaacg
301gggacgtgaa gacagacgtc aataagatcg aggagttcct ggaggagacc ttgacccctg
361aaaagtaccc caaactggct gcaaaacacc gggaatccaa cacagcgggc atcgacatct
421tttccaagtt ttctgcctac atcaaaaata ccaagcagca gaacaatgct gctcttgaaa
481gaggcctaac caaggctcta aagaaattgg atgactacct gaacacccct ctaccagagg
541agattgacgc caacacttgt ggggaagaca aggggtcccg gcgcaagttc ctggatgggg
601atgagctgac cctggctgac tgcaatctgt tgcccaagct ccatgtggtc aagattgtgg
661ccaagaaata ccgcaactat gatatcccgg ctgagatgac aggcctgtgg cggtacctca
721agaacgccta tgcccgtgat gagttcacca acacctgtgc agctgacagt gagatcgagt
781tggcctacgc tgatgtcgcc aaacgcctca gccgatcctg cccaactttc ttgtacaaag
841tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
901gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)