Transcript: Human NM_016929.5

Homo sapiens chloride intracellular channel 5 (CLIC5), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
CLIC5 (53405)
Length:
5706
CDS:
319..1074

Additional Resources:

NCBI RefSeq record:
NM_016929.5
NBCI Gene record:
CLIC5 (53405)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_016929.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420853 TCTTAGAAAGAGATCTATTAC pLKO_005 1503 3UTR 100% 13.200 18.480 N CLIC5 n/a
2 TRCN0000044378 CCTAACCAAGGCTCTAAAGAA pLKO.1 738 CDS 100% 5.625 7.875 N CLIC5 n/a
3 TRCN0000044380 GCCTACGCTGATGTCGCCAAA pLKO.1 1036 CDS 100% 1.350 1.890 N CLIC5 n/a
4 TRCN0000418969 ACTAGCTTCTTCTGCCAATAT pLKO_005 1377 3UTR 100% 13.200 10.560 N CLIC5 n/a
5 TRCN0000044379 CGTGAAGACAGACGTCAATAA pLKO.1 558 CDS 100% 13.200 10.560 N CLIC5 n/a
6 TRCN0000424930 ACAGCGGGCATCGACATCTTT pLKO_005 655 CDS 100% 5.625 4.500 N CLIC5 n/a
7 TRCN0000044381 CTGAAAGGAGTCGTGTTCAAT pLKO.1 448 CDS 100% 5.625 3.938 N CLIC5 n/a
8 TRCN0000044382 GCCAAGAAATACCGCAACTAT pLKO.1 913 CDS 100% 5.625 3.938 N CLIC5 n/a
9 TRCN0000069795 CCGCCCTTCCTGACCTTCAAT pLKO.1 532 CDS 100% 1.875 1.125 N Clic5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_016929.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03390 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03390 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000474679 TTTAATTCCTGACGCTCAGATTGC pLX_317 19.6% 100% 100% V5 n/a
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