Construct: ORF ccsbBroad304_04800
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010024.1_s304c1, BRDN0000411684
- Derived from:
- ccsbBroadEn_04800
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF816 (125893)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_04800
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 125893 | ZNF816 | zinc finger protein 816 | NM_001031665.3 | 100% | 100% | |
| 2 | human | 125893 | ZNF816 | zinc finger protein 816 | NM_001202456.2 | 100% | 100% | |
| 3 | human | 125893 | ZNF816 | zinc finger protein 816 | NM_001202457.2 | 100% | 100% | |
| 4 | human | 388559 | ZNF888 | zinc finger protein 888 | NM_001310127.1 | 67.3% | 60.1% | (many diffs) |
| 5 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_005259451.5 | 67.3% | 60.1% | (many diffs) |
| 6 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026799.2 | 67.3% | 60.1% | (many diffs) |
| 7 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026800.2 | 63.2% | 55.9% | (many diffs) |
| 8 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321522.1 | 55.5% | 47.5% | (many diffs) |
| 9 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321523.1 | 55.5% | 47.5% | (many diffs) |
| 10 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321524.1 | 55.5% | 47.5% | (many diffs) |
| 11 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_138374.3 | 55.5% | 47.5% | (many diffs) |
| 12 | human | 100529240 | ZNF816-ZNF321P | ZNF816-ZNF321P readthrough | NM_001202473.1 | 31.8% | 28.4% | (many diffs) |
| 13 | human | 162967 | ZNF320 | zinc finger protein 320 | NM_001351777.1 | 8.3% | 6.3% | (many diffs) |
| 14 | human | 162967 | ZNF320 | zinc finger protein 320 | XM_024451398.1 | 8.3% | 6.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2022
- ORF length:
- 1953
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gttacgtgag gaagccacca agaagagcaa agaaaaggag ccagggatgg 121 ctcttcctca gggacgcttg actttcaggg atgtggctat agagttctct ttggaggagt 181 ggaaatgcct gaaccctgca cagagggctt tatacagggc tgtgatgttg gagaactaca 241 ggaacctgga gtttgtggat agctctttaa aatccatgat ggagttctca tcaaccaggc 301 acagtattac aggagaagtg atccacacag ggacgttgca aagacataaa agtcatcaca 361 ttggagattt ttgcttccca gaaatgaaga aagatattca tcactttgag tttcagtggc 421 aagaagttga aagaaatggc catgaagcac ccatgacaaa aatcaaaaag ttgactggta 481 gtacagaccg aagtgatcac aggcatgctg gaaacaagcc tattaaagat cagcttggat 541 taagctttca ttcgcatctg cctgaactcc acatgtttca gactaaaggg aaaattagta 601 accaattgga caagtctatc ggtgcttcct cagcttcaga atcccaaaga atttcttgta 661 ggctcaaaac tcatatttct aataagtatg ggaagaattt cctccattct tcattcacac 721 aaatacagga aatatgcatg agagaaaaac cttgccaaag taatgagtgt ggcaaagcct 781 ttaattatag ctcactctta aggagacacc acataaccca ttcaagagag agagaatata 841 aatgtgatgt atgtggcaag atctttaatc agaagcaata cattgtatat catcatagat 901 gtcacactgg tgagaaaact tacaagtgta atgagtgtgg gaagaccttc actcagatgt 961 catcccttgt atgccatcgt agacttcata ctggagagaa accttacaag tgtaatgagt 1021 gtggcaagac cttcagtgag aagtcatccc ttagatgcca tcgtagactt catactggag 1081 agaaacctta caagtgtaat gagtgtggca agacttttgg tcgaaattca gcccttgtaa 1141 ttcataaggc aattcatact ggagagaaac cttacaagtg taatgagtgt ggcaagacct 1201 tcagtcagaa atcatccctt caatgccatc atatacttca cactggagag aaaccttaca 1261 aatgtgaaga atgtgacaat gtttacattc gcagatcaca ccttgaaaga cataggaaga 1321 ttcatactgg agagggatca tacaaatgta aggtttgtga caaggttttc cggagtgatt 1381 cataccttgc agaacatcag agagttcata ctggagagaa accatacaag tgtaataaat 1441 gtggcaggag tttcagtcgg aagtcatccc ttcaatacca tcatacactt cacactggag 1501 agaaacctta cacatgtaat gaatgtggca aggtttttag tcgaagagaa aaccttgcac 1561 gtcatcatag acttcatgct ggagagaaac cttacaaatg tgaagaatgt gacaaagttt 1621 tcagtcgcag atcacacctt gaaagacata ggagaattca tactggggaa aaaccataca 1681 aatgtaaggt ttgtgacaag gctttccgga gtgattcatg ccttgcaaac catacgagag 1741 ttcatactgg agagaaacct tacaagtgta ataaatgtgc gaaggttttt aatcaaaaag 1801 gaatccttgc acaacatcag agagttcata ctggagagaa accttacaag tgtaatgaat 1861 gtggcaaggt ttttaatcaa aaagcaagcc ttgcaaaaca tcagagagtt catactgcag 1921 agaaacctta caagtgtaat gagtgtggca aagcctttac tggacagtca acacttattc 1981 accatcaagc aatccatggg tgtagggaaa ctttacaaat gttgccaact ttcttgtaca 2041 aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag 2101 ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta