Construct: ORF ccsbBroadEn_04800

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010024.1_s300c1, BRDN0000398135
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF816 (125893)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 125893 ZNF816 zinc finger protein 816 NM_001031665.3 100% 100%
2 human 125893 ZNF816 zinc finger protein 816 NM_001202456.2 100% 100%
3 human 125893 ZNF816 zinc finger protein 816 NM_001202457.2 100% 100%
4 human 388559 ZNF888 zinc finger protein 888 NM_001310127.1 67.3% 60.1% (many diffs)
5 human 388559 ZNF888 zinc finger protein 888 XM_005259451.5 67.3% 60.1% (many diffs)
6 human 388559 ZNF888 zinc finger protein 888 XM_017026799.2 67.3% 60.1% (many diffs)
7 human 388559 ZNF888 zinc finger protein 888 XM_017026800.2 63.2% 55.9% (many diffs)
8 human 91664 ZNF845 zinc finger protein 845 NM_001321522.1 55.5% 47.5% (many diffs)
9 human 91664 ZNF845 zinc finger protein 845 NM_001321523.1 55.5% 47.5% (many diffs)
10 human 91664 ZNF845 zinc finger protein 845 NM_001321524.1 55.5% 47.5% (many diffs)
11 human 91664 ZNF845 zinc finger protein 845 NM_138374.3 55.5% 47.5% (many diffs)
12 human 100529240 ZNF816-ZNF321P ZNF816-ZNF321P readthrough NM_001202473.1 31.8% 28.4% (many diffs)
13 human 162967 ZNF320 zinc finger protein 320 NM_001351777.1 8.3% 6.3% (many diffs)
14 human 162967 ZNF320 zinc finger protein 320 XM_024451398.1 8.3% 6.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2022
ORF length:
1953
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTTACGTGAG GAAGCCACCA AGAAGAGCAA AGAAAAGGAG CCAGGGATGG
121CTCTTCCTCA GGGACGCTTG ACTTTCAGGG ATGTGGCTAT AGAGTTCTCT TTGGAGGAGT
181GGAAATGCCT GAACCCTGCA CAGAGGGCTT TATACAGGGC TGTGATGTTG GAGAACTACA
241GGAACCTGGA GTTTGTGGAT AGCTCTTTAA AATCCATGAT GGAGTTCTCA TCAACCAGGC
301ACAGTATTAC AGGAGAAGTG ATCCACACAG GGACGTTGCA AAGACATAAA AGTCATCACA
361TTGGAGATTT TTGCTTCCCA GAAATGAAGA AAGATATTCA TCACTTTGAG TTTCAGTGGC
421AAGAAGTTGA AAGAAATGGC CATGAAGCAC CCATGACAAA AATCAAAAAG TTGACTGGTA
481GTACAGACCG AAGTGATCAC AGGCATGCTG GAAACAAGCC TATTAAAGAT CAGCTTGGAT
541TAAGCTTTCA TTCGCATCTG CCTGAACTCC ACATGTTTCA GACTAAAGGG AAAATTAGTA
601ACCAATTGGA CAAGTCTATC GGTGCTTCCT CAGCTTCAGA ATCCCAAAGA ATTTCTTGTA
661GGCTCAAAAC TCATATTTCT AATAAGTATG GGAAGAATTT CCTCCATTCT TCATTCACAC
721AAATACAGGA AATATGCATG AGAGAAAAAC CTTGCCAAAG TAATGAGTGT GGCAAAGCCT
781TTAATTATAG CTCACTCTTA AGGAGACACC ACATAACCCA TTCAAGAGAG AGAGAATATA
841AATGTGATGT ATGTGGCAAG ATCTTTAATC AGAAGCAATA CATTGTATAT CATCATAGAT
901GTCACACTGG TGAGAAAACT TACAAGTGTA ATGAGTGTGG GAAGACCTTC ACTCAGATGT
961CATCCCTTGT ATGCCATCGT AGACTTCATA CTGGAGAGAA ACCTTACAAG TGTAATGAGT
1021GTGGCAAGAC CTTCAGTGAG AAGTCATCCC TTAGATGCCA TCGTAGACTT CATACTGGAG
1081AGAAACCTTA CAAGTGTAAT GAGTGTGGCA AGACTTTTGG TCGAAATTCA GCCCTTGTAA
1141TTCATAAGGC AATTCATACT GGAGAGAAAC CTTACAAGTG TAATGAGTGT GGCAAGACCT
1201TCAGTCAGAA ATCATCCCTT CAATGCCATC ATATACTTCA CACTGGAGAG AAACCTTACA
1261AATGTGAAGA ATGTGACAAT GTTTACATTC GCAGATCACA CCTTGAAAGA CATAGGAAGA
1321TTCATACTGG AGAGGGATCA TACAAATGTA AGGTTTGTGA CAAGGTTTTC CGGAGTGATT
1381CATACCTTGC AGAACATCAG AGAGTTCATA CTGGAGAGAA ACCATACAAG TGTAATAAAT
1441GTGGCAGGAG TTTCAGTCGG AAGTCATCCC TTCAATACCA TCATACACTT CACACTGGAG
1501AGAAACCTTA CACATGTAAT GAATGTGGCA AGGTTTTTAG TCGAAGAGAA AACCTTGCAC
1561GTCATCATAG ACTTCATGCT GGAGAGAAAC CTTACAAATG TGAAGAATGT GACAAAGTTT
1621TCAGTCGCAG ATCACACCTT GAAAGACATA GGAGAATTCA TACTGGGGAA AAACCATACA
1681AATGTAAGGT TTGTGACAAG GCTTTCCGGA GTGATTCATG CCTTGCAAAC CATACGAGAG
1741TTCATACTGG AGAGAAACCT TACAAGTGTA ATAAATGTGC GAAGGTTTTT AATCAAAAAG
1801GAATCCTTGC ACAACATCAG AGAGTTCATA CTGGAGAGAA ACCTTACAAG TGTAATGAAT
1861GTGGCAAGGT TTTTAATCAA AAAGCAAGCC TTGCAAAACA TCAGAGAGTT CATACTGCAG
1921AGAAACCTTA CAAGTGTAAT GAGTGTGGCA AAGCCTTTAC TGGACAGTCA ACACTTATTC
1981ACCATCAAGC AATCCATGGG TGTAGGGAAA CTTTACAAAT GTTGCCAACT TTCTTGTACA
2041AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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