Construct: ORF ccsbBroad304_05418

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010953.1_s304c1, BRDN0000461600
Derived from:
ccsbBroadEn_05418
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LIN9 (286826)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_05418
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_173083.3 100% 100%
2 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001366238.1 99.8% 99.8% 109_110insAAG
3 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001366245.2 97.1% 97.1% 0_1ins48
4 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001366237.1 95.1% 95.1% 1084_1085ins81
5 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001366239.1 93.9% 93.9% 984_985ins102
6 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001270409.1 93.7% 93.7% 206_207ins105
7 human 286826 LIN9 lin-9 DREAM MuvB core compl... XM_005273102.3 88.3% 87.4% (many diffs)
8 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001270410.2 87.8% 87.8% 0_1ins204
9 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001366241.1 87.8% 87.8% 0_1ins204
10 human 286826 LIN9 lin-9 DREAM MuvB core compl... XM_006711767.4 87.8% 87.8% 0_1ins204
11 human 286826 LIN9 lin-9 DREAM MuvB core compl... XM_024446565.1 82.8% 81.9% (many diffs)
12 human 286826 LIN9 lin-9 DREAM MuvB core compl... NM_001366240.1 80.4% 80.4% 0_1ins327
13 human 286826 LIN9 lin-9 DREAM MuvB core compl... XM_017001084.1 77.2% 76.2% (many diffs)
14 human 286826 LIN9 lin-9 DREAM MuvB core compl... XM_011544173.2 56.2% 56.2% 1_402del;1569_1570ins507
15 mouse 72568 Lin9 lin-9 homolog (C. elegans) NM_001103182.2 90.2% 97.1% (many diffs)
16 mouse 72568 Lin9 lin-9 homolog (C. elegans) XM_006496987.1 78.6% 85.4% (many diffs)
17 mouse 72568 Lin9 lin-9 homolog (C. elegans) XM_006496988.3 78.6% 85.4% (many diffs)
18 mouse 72568 Lin9 lin-9 homolog (C. elegans) NR_120498.1 47.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1743
ORF length:
1674
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcaccgcggc gggcagcctt tgaaaaagcg gcgcggctcg ttcaagatgg
121cggagctcga ccagttgcct gacgagagct cttcagcaaa agcccttgtc agtttaaaag
181aaggaagctt atctaacacg tggaatgaaa agtacagttc tttacagaaa acacctgttt
241ggaaaggcag gaatacaagc tctgctgtgg aaatgccttt cagaaattca aaacgaagtc
301gacttttttc tgatgaagat gataggcaaa taaatacaag gtcacctaaa agaaaccaga
361gggttgcaat ggttccacag aaatttacag caacaatgtc aacaccagat aagaaagctt
421cacagaagat tggttttcga ttacgtaatc tgctcaagct tcctaaagca cataaatggt
481gtatatacga gtggttctat tcaaatatag ataaaccact ttttgaaggt gataatgact
541tctgtgtatg tctaaaggaa tcttttccta atttgaaaac aagaaagtta acaagagtag
601aatggggaaa aattcggcgg cttatgggaa aaccacggag atgttcttct gcattttttg
661aggaagagag atcagcatta aaacagaaac ggcagaaaat aaggctctta caacaaagga
721aagttgcaga tgtttcacaa ttcaaagatc tcccagatga aattcctttg cctctggtta
781ttggaacgaa agttacagca cgattacgtg gtgttcatga tggtttgttc actggacaaa
841tagatgctgt ggatactctt aatgctactt atagagtaac ttttgatagg acagggcttg
901gaacccatac catccctgac tatgaagttc tcagtaatga acctcatgag acaatgccaa
961ttgctgcctt tggacaaaaa cagcggcctt ctcgattttt tatgacccca ccacggttac
1021attatactcc tcctctccag tcaccaatta tagataatga tcctttatta ggacagtcgc
1081cgtggagaag taaaatttct ggctctgaca ctgaaacatt aggtggtttt ccagtagaat
1141ttcttatcca agtgaccaga ttatcaaaaa ttctcatgat taaaaaggaa catatcaaga
1201aattaaggga aatgaacaca gaagcagaaa aattgaaatc atattccatg cccatcagca
1261ttgaatttca gcggagatat gcaacaattg ttctggagct tgaacagctg aacaaggacc
1321taaacaaagt tttgcataaa gttcaacagt attgctatga gcttgctcca gaccaggggc
1381tccagcctgc agatcagcca acagatatga gacgcaggtg tgaggaagaa gcacaggaaa
1441ttgttcggca tgcaaattcc tcaacaggac agccctgcgt tgaaaatgaa aatctgacag
1501acttaatttc caggcttaca gctattttgt tacaaattaa gtgtctagca gaaggaggag
1561acctgaattc ctttgaattc aaatcactta cagactcatt aaatgatatc aagagtacaa
1621tagacgcttc taatatcagt tgctttcaga ataatgtaga aatccatgtt gcacatattc
1681agagtggcct gagccagatg ggaaacttac atgcctttgc agcaaataac accaacagag
1741acttgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
1801tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
1861tctggatta

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