Construct: ORF ccsbBroad304_06057
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014552.1_s304c1, BRDN0000461350
- Derived from:
- ccsbBroadEn_06057
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1G3 (1456)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_06057
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001031812.3 | 99.9% | 99.7% | 271A>G |
| 2 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001270572.1 | 99.6% | 99.5% | 271A>G;843_845delAGA |
| 3 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_005271895.3 | 99.6% | 99.5% | 271A>G;843_845delAGA |
| 4 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009069.1 | 99.6% | 99.5% | 271A>G;843_845delAGA |
| 5 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009070.2 | 98% | 97.6% | 271A>G;1193_1194ins24 |
| 6 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364143.2 | 97.7% | 97.4% | 271A>G;843_845delAGA;1196_1197ins24 |
| 7 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364141.2 | 94.3% | 94.1% | 177_251del;346A>G |
| 8 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009065.2 | 94.3% | 94.1% | 177_251del;346A>G |
| 9 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009064.2 | 94.1% | 93.9% | 177_251del;346A>G;918_920delAGA |
| 10 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001044723.2 | 92.8% | 92.7% | 271A>G;1084_1179del |
| 11 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_005271892.3 | 92.8% | 92.7% | 271A>G;1084_1179del |
| 12 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364140.2 | 92.6% | 92.5% | 271A>G;843_845delAGA;1087_1182del |
| 13 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009068.2 | 92.5% | 92.1% | 177_251del;346A>G;1268_1269ins24 |
| 14 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009067.2 | 92.3% | 91.9% | (many diffs) |
| 15 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_004384.4 | 91.1% | 90.7% | 271A>G;1084_1179del;1289_1290ins24 |
| 16 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_005271894.3 | 91.1% | 90.7% | 271A>G;1084_1179del;1289_1290ins24 |
| 17 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009061.2 | 88% | 87.9% | 177_251del;346A>G;1159_1254del |
| 18 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009062.1 | 88% | 87.9% | 177_251del;346A>G;1159_1254del |
| 19 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009057.2 | 87.8% | 87.7% | (many diffs) |
| 20 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009059.1 | 87.8% | 87.7% | (many diffs) |
| 21 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009060.1 | 87.8% | 87.7% | (many diffs) |
| 22 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | XM_017009063.2 | 86.2% | 85.8% | (many diffs) |
| 23 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001270573.2 | 82.1% | 82% | 0_1ins225;46A>G |
| 24 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364149.2 | 82.1% | 82% | 0_1ins225;46A>G |
| 25 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364150.2 | 82.1% | 82% | 0_1ins225;46A>G |
| 26 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364145.2 | 81.9% | 81.8% | 0_1ins225;46A>G;618_620delAGA |
| 27 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364144.2 | 76.4% | 76.2% | 0_1ins225;46A>G;859_954del |
| 28 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364147.2 | 73.2% | 73.2% | 0_1ins339 |
| 29 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001270574.2 | 73.1% | 73.1% | 0_1ins339;504_506delAGA |
| 30 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364148.2 | 71.3% | 71.1% | 0_1ins339;854_855ins24 |
| 31 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364146.2 | 68.1% | 68.1% | 0_1ins339;745_840del |
| 32 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526235.1 | 92.5% | 98.8% | (many diffs) |
| 33 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | NM_152809.2 | 92.3% | 98.5% | (many diffs) |
| 34 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526237.1 | 90.8% | 96.6% | (many diffs) |
| 35 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526236.1 | 90.6% | 96.4% | (many diffs) |
| 36 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526232.2 | 86.2% | 92% | (many diffs) |
| 37 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526231.2 | 86% | 91.8% | (many diffs) |
| 38 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526230.2 | 85.8% | 91.6% | (many diffs) |
| 39 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526234.2 | 84.4% | 89.8% | (many diffs) |
| 40 | mouse | 70425 | Csnk1g3 | casein kinase 1, gamma 3 | XM_006526233.2 | 84.2% | 89.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1338
- ORF length:
- 1269
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggaaaataaa aagaaagaca aggacaaatc agatgataga atggcacgac 121 ctagtggtcg atcgggacac aacactcgag gaactgggtc ttcatcgtct ggagttttaa 181 tggttggacc taactttaga gttggaaaaa aaattggatg tggcaatttt ggagaattac 241 gattagggaa aaatttatac acaaatgaat atgtggcaat taagttggag cccatgaaat 301 caagagcacc acagctacat ttggaataca gattctatga gcagttagga tctggagatg 361 gtatacctca agtttactat ttcggccctt gtggtaaata caatgctatg gtgctggaac 421 tgctgggacc tagtttggaa gacttgtttg acttgtgtga cagaacattt tctcttaaaa 481 cagttctcat gatagctata caactgattt ctcgcatgga atatgtccat tcaaagaact 541 tgatatacag agatgtaaaa cctgagaact tcttaatagg acgaccagga aacaaaaccc 601 agcaagttat tcacattata gattttggtt tggcaaagga atatattgat ccggagacaa 661 agaaacacat accatacaga gaacacaaga gccttacagg aacagctaga tatatgagca 721 taaacacaca tttaggaaaa gaacaaagta gaagagacga tttagaagct ttaggtcata 781 tgttcatgta ttttctgaga ggcagtcttc cttggcaagg cttaaaggct gacacattaa 841 aggagaggta tcagaaaatt ggagatacaa aacgggctac accaatagaa gtgttatgtg 901 aaaattttcc agaaatggca acatatcttc gttatgtaag aaggctagat ttttttgaaa 961 aaccagacta tgactactta agaaagcttt ttactgactt gtttgatcga aaaggatata 1021 tgtttgatta tgaatatgac tggattggta aacagttgcc tactccagtg ggtgcagttc 1081 agcaagatcc tgctctgtca tcaaacagag aagcacatca acacagagat aagatgcaac 1141 aatccaaaaa ccaggttgta agttctacaa atggagagtt aaacacagat gaccccaccg 1201 caggacgttc aaatgcaccc atcacagccc ctactgaagt agaagtgatg gatgaaacca 1261 actgccagaa agtgttgaac atgtggtgct gctgtttttt caaacgaagg aaaaggaaaa 1321 ccatacagcg ccacaaattg ccaactttct tgtacaaagt ggttggtaag cctatcccta 1381 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 1441 agtcgacaat caacctctgg atta