Construct: ORF ccsbBroad304_07096
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002229.1_s304c1, BRDN0000407622
- Derived from:
- ccsbBroadEn_07096
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TPTE (7179)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_07096
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_199259.3 | 99.9% | 99.8% | 1355T>C |
| 2 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_199261.3 | 96.6% | 96.5% | 115_168del;1409T>C |
| 3 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_199260.3 | 96.1% | 96% | 119_120ins60;1295T>C |
| 4 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_199254.2 | 89.5% | 83.1% | (many diffs) |
| 5 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_130785.3 | 77.4% | 70.1% | (many diffs) |
| 6 | human | 7179 | TPTE | transmembrane phosphatase w... | NM_001290224.1 | 77.4% | 77.2% | 0_1ins360;995T>C |
| 7 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_001141968.1 | 69.3% | 63.2% | (many diffs) |
| 8 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NR_073485.1 | 67.1% | (many diffs) | |
| 9 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NR_073486.1 | 60.9% | (many diffs) | |
| 10 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NR_073487.1 | 55.7% | (many diffs) | |
| 11 | human | 644623 | TPTE2P2 | transmembrane phosphoinosit... | XR_001749878.2 | 52.8% | (many diffs) | |
| 12 | human | 220115 | TPTE2P3 | transmembrane phosphoinosit... | NR_002793.1 | 48.6% | (many diffs) | |
| 13 | human | 93492 | TPTE2 | transmembrane phosphoinosit... | NM_001271850.1 | 33% | 28.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1665
- ORF length:
- 1599
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgaa tgaaagtcct gatccgactg acctggcggg agtcatcatt gagctcggcc 121 ccaatgacag tccacagaca agtgaattta aaggagcaac cgaggaggca cctgcgaaag 181 aaagtgtgtt agcacgactt tccaagtttg aagttgaaga tgctgaaaat gttgcttcat 241 atgacagcaa gattaagaaa attgtgcatt caattgtatc atcctttgca tttggactat 301 ttggagtttt cctggtctta ctggatgtca ctctcatcct tgccgaccta attttcactg 361 acagcaaact ttatattcct ttggagtatc gttctatttc tctagctatt gccttatttt 421 ttctcatgga tgttcttctt cgagtatttg tagaaaggag acagcagtat ttttctgact 481 tatttaacat tttagatact gccattattg tgattcttct gctggttgat gtcgtttaca 541 ttttttttga cattaagttg cttaggaata ttcccagatg gacacattta cttcgacttc 601 tacgacttat tattctgtta agaatttttc atctgtttca tcaaaaaaga caacttgaaa 661 agctgataag aaggcgggtt tcagaaaaca aaaggcgata cacaagggat ggatttgacc 721 tagacctcac ttacgttaca gaacgtatta ttgctatgtc atttccatct tctggaaggc 781 agtctttcta tagaaatcca atcaaggaag ttgtgcggtt tctagataag aaacaccgaa 841 accactatcg agtctacaat ctatgcagtg aaagagctta cgatcctaag cacttccata 901 atagggtcgt tagaatcatg attgatgatc ataatgtccc cactctacat cagatggtgg 961 ttttcaccaa ggaagtaaat gagtggatgg ctcaagatct tgaaaacatc gtagcgattc 1021 actgtaaagg aggcacagat agaacaggaa ctatggtttg tgccttcctt attgcctctg 1081 aaatatgttc aactgcaaag gaaagcctgt attattttgg agaaaggcga acagataaaa 1141 cccacagcga aaaatttcag ggagtagaaa ctccttctca gaagagatat gttgcatatt 1201 ttgcacaagt gaaacatctc tacaactgga atctccctcc aagacggata ctctttataa 1261 aacacttcat tatttattcg attcctcgtt atgtacgtga tctaaaaatc caaatagaaa 1321 tggagaaaaa ggttgtcttt tccactattt cattaggaaa atgttcggta cttgataaca 1381 ttacaacaga caaaatatta attgatgtat tcgacggtcc acctctgtat gatgatgtga 1441 aagtgcagtt tttctattcg aatcttccta catactatga caattgctca ttttacttct 1501 ggttgcacac atcttttatt gaaaataaca ggctttatct accaaaaaat gaattggata 1561 atctacataa acaaaaagca cggagaattt atccatcaga ttttgccgtg gagatacttt 1621 ttggcgagaa aatgacttcc agtgatgttg tagctggatc cgattaccca actttcttgt 1681 acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat 1741 gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a