Construct: ORF ccsbBroad304_07971

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005875.1_s304c1, BRDN0000409434
Derived from:
ccsbBroadEn_07971
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PNKD (25953)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07971
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25953 PNKD PNKD metallo-beta-lactamase... NM_015488.5 99.7% 99.2% 34G>A;98C>T;139C>T
2 human 25953 PNKD PNKD metallo-beta-lactamase... XM_017003771.1 92.2% 91.6% (many diffs)
3 human 25953 PNKD PNKD metallo-beta-lactamase... NM_022572.4 86.8% 78.9% (many diffs)
4 human 25953 PNKD PNKD metallo-beta-lactamase... XM_017003772.1 79.4% 71.7% (many diffs)
5 human 25953 PNKD PNKD metallo-beta-lactamase... NM_001077399.3 31% 20.4% (many diffs)
6 mouse 56695 Pnkd paroxysmal nonkinesiogenic ... NM_001039509.1 90.3% 95.3% (many diffs)
7 mouse 56695 Pnkd paroxysmal nonkinesiogenic ... XM_006496167.3 83.6% 86.1% (many diffs)
8 mouse 56695 Pnkd paroxysmal nonkinesiogenic ... NM_019999.2 78.2% 75% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1221
ORF length:
1155
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggcggtggta gctgctacgg cgctgaagag ccggggggcg agaaatgccc
121gcgtcctccg ggggattctc gcaggagcca cagctaacaa ggtttctcat aacaggaccc
181gggccctgca aagccacagc tcctcagagg gcaaggagga acctgaaccc ctatccccgg
241agctggaata cattcccaga aagaggggca agaaccccat gaaagctgtg ggactggcct
301ggtacagcct gtacacccgc acctggctcg ggtacctctt ctaccgacag cagctgcgca
361gggctcggaa tcgctaccct aaaggccact cgaaaaccca gccccgcctc ttcaatggag
421tgaaggtgct tcccatccct gtcctctcgg acaactacag ctacctcatc atcgacaccc
481aggcccagct ggctgtggct gtggaccctt cagaccctcg ggctgtgcag gcttccattg
541aaaaggaagg ggtcaccttg gtcgccattc tgtgtactca caagcactgg gaccacagtg
601gagggaaccg tgacctcagc cggcggcacc gggactgtcg ggtgtacggg agccctcagg
661acggcatccc ctacctcacc catcccctgt gtcatcaaga tgtggtcagc gtgggacggc
721ttcagatccg ggccctggct acacctggcc acacacaagg ccatctggtc tacctactgg
781atggggagcc ctacaagggt ccctcctgcc tcttctcagg ggacctgctc ttcctctctg
841gctgtgggcg gacctttgag ggcaatgcag agaccatgct gagctcactg gacactgtgc
901tggggctagg ggatgacacc cttctgtggc ctggtcatga gtatgcagag gagaacctgg
961gctttgcagg tgtggtggag cccgagaacc tggcccggga gaggaagatg cagtgggtgc
1021agcggcagcg gctggagcgc aagggcacgt gcccatctac cctgggagag gagcgctcct
1081acaacccgtt cctgagaacc cactgcctgg cgctacagga ggctctgggg ccggggccgg
1141gccccactgg ggatgatgac tactcccggg cccagctcct ggaagagctc cgccggctga
1201aggatatgca caagagcaag tgcccaactt tcttgtacaa agtggttggt aagcctatcc
1261ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1321ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)