Construct: ORF ccsbBroad304_08603
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016659.1_s304c1, BRDN0000404165
- Derived from:
- ccsbBroadEn_08603
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CBWD1 (55871)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08603
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145355.1 | 99.9% | 100% | 468A>G |
2 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330339.1 | 99% | 98.6% | (many diffs) |
3 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517961.2 | 94.6% | 94.7% | 468A>G;596_597ins57 |
4 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_018491.3 | 88.7% | 86.7% | (many diffs) |
5 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_172003.3 | 88% | 85.5% | (many diffs) |
6 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_201453.3 | 87.9% | 85% | (many diffs) |
7 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001330668.1 | 87.9% | 84.7% | (many diffs) |
8 | human | 644019 | CBWD6 | COBW domain containing 6 | NM_001085457.1 | 87.5% | 84.2% | (many diffs) |
9 | human | 55871 | CBWD1 | COBW domain containing 1 | NM_001145356.1 | 84% | 82% | (many diffs) |
10 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251513.4 | 83.7% | 81.7% | (many diffs) |
11 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330336.1 | 83.2% | 80.7% | (many diffs) |
12 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277637.2 | 83.1% | 80.2% | (many diffs) |
13 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001363751.1 | 83.1% | 80% | (many diffs) |
14 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272750.1 | 83% | 80% | (many diffs) |
15 | human | 445571 | CBWD3 | COBW domain containing 3 | NM_001291821.1 | 82.9% | 80% | (many diffs) |
16 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015035.1 | 82.7% | 79.5% | (many diffs) |
17 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015020.1 | 82.6% | 79.2% | (many diffs) |
18 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251514.1 | 81.5% | 79.5% | (many diffs) |
19 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330337.1 | 80.9% | 78.5% | (many diffs) |
20 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277639.2 | 80.9% | 78% | (many diffs) |
21 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_005272751.1 | 80.9% | 77.7% | (many diffs) |
22 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_024447653.1 | 80.6% | 77.5% | (many diffs) |
23 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015019.1 | 79.6% | 76.3% | (many diffs) |
24 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015023.1 | 77.8% | 74.5% | (many diffs) |
25 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251515.1 | 76.8% | 74.7% | (many diffs) |
26 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_005263604.2 | 76.1% | 73.7% | (many diffs) |
27 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_005277640.2 | 76.1% | 73.2% | (many diffs) |
28 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001024916.3 | 76.1% | 73% | (many diffs) |
29 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_017014730.1 | 75.9% | 73% | (many diffs) |
30 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015036.1 | 75.8% | 72.7% | (many diffs) |
31 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015024.1 | 75.7% | 72.5% | (many diffs) |
32 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015021.1 | 75% | 71.8% | (many diffs) |
33 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014456.1 | 74.9% | 74% | (many diffs) |
34 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_024447453.1 | 74.9% | 74% | (many diffs) |
35 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015022.1 | 73% | 69.8% | (many diffs) |
36 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_024452717.1 | 69.6% | 69.3% | (many diffs) |
37 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517962.3 | 69.2% | 67.2% | (many diffs) |
38 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517963.1 | 68.7% | 68.8% | 0_1ins336;132A>G |
39 | human | 150472 | CBWD2 | COBW domain containing 2 | XM_011510667.1 | 68.6% | 66.5% | (many diffs) |
40 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_006717116.1 | 68.6% | 66.2% | (many diffs) |
41 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_006716914.1 | 68.6% | 66% | (many diffs) |
42 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015025.1 | 68.4% | 65.3% | (many diffs) |
43 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014457.1 | 67.1% | 66.2% | (many diffs) |
44 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015028.1 | 66.3% | 65.2% | (many diffs) |
45 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015029.2 | 64.8% | 64.1% | (many diffs) |
46 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746301.1 | 63.6% | (many diffs) | |
47 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014455.1 | 61.6% | 59% | (many diffs) |
48 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015026.1 | 61.2% | 58.5% | (many diffs) |
49 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746303.1 | 60.8% | (many diffs) | |
50 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330340.1 | 60.5% | 59.1% | (many diffs) |
51 | human | 150472 | CBWD2 | COBW domain containing 2 | NM_001330342.1 | 60.5% | 59.1% | (many diffs) |
52 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014459.1 | 60.4% | 59.1% | (many diffs) |
53 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_011518706.2 | 60.3% | 59.1% | (many diffs) |
54 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_024447652.1 | 60% | 58.3% | (many diffs) |
55 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746302.1 | 58.6% | (many diffs) | |
56 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746234.1 | 58% | (many diffs) | |
57 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428504.1 | 57.9% | (many diffs) | |
58 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015031.1 | 57.6% | 56% | (many diffs) |
59 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746352.1 | 57.2% | (many diffs) | |
60 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015027.1 | 56.7% | 49.6% | (many diffs) |
61 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746232.1 | 56.6% | (many diffs) | |
62 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746299.1 | 55.9% | (many diffs) | |
63 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746297.1 | 54.9% | (many diffs) | |
64 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956769.1 | 54.7% | (many diffs) | |
65 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138473.1 | 54.7% | (many diffs) | |
66 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746237.2 | 53.2% | (many diffs) | |
67 | human | 150472 | CBWD2 | COBW domain containing 2 | NR_138474.1 | 53.1% | (many diffs) | |
68 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014461.1 | 52.7% | 51.5% | (many diffs) |
69 | human | 445571 | CBWD3 | COBW domain containing 3 | XM_017014732.1 | 52.6% | 51.5% | (many diffs) |
70 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746300.1 | 52.5% | (many diffs) | |
71 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015030.1 | 52% | 44.9% | (many diffs) |
72 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746360.1 | 51.6% | (many diffs) | |
73 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956768.1 | 50.7% | (many diffs) | |
74 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015033.1 | 50.3% | 48.9% | (many diffs) |
75 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_005251517.5 | 49.7% | 46.8% | (many diffs) |
76 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_002956784.1 | 49% | (many diffs) | |
77 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_428503.2 | 49% | (many diffs) | |
78 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_017014925.1 | 48.6% | 47% | (many diffs) |
79 | human | 220869 | CBWD5 | COBW domain containing 5 | XM_017014458.1 | 48% | 45.7% | (many diffs) |
80 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001286835.1 | 47.9% | 42.9% | (many diffs) |
81 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929802.1 | 45.7% | (many diffs) | |
82 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015032.1 | 44.1% | 40.6% | (many diffs) |
83 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_244814.2 | 44% | (many diffs) | |
84 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746239.1 | 42.7% | (many diffs) | |
85 | human | 55871 | CBWD1 | COBW domain containing 1 | XM_011517964.3 | 42.5% | 39.6% | (many diffs) |
86 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929803.1 | 42.1% | (many diffs) | |
87 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746240.1 | 41.5% | (many diffs) | |
88 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746359.1 | 41.4% | (many diffs) | |
89 | human | 55871 | CBWD1 | COBW domain containing 1 | XR_001746353.1 | 40.7% | (many diffs) | |
90 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746238.1 | 40.1% | (many diffs) | |
91 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_929804.1 | 39.8% | (many diffs) | |
92 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_922864.1 | 39.4% | (many diffs) | |
93 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746298.1 | 38.8% | (many diffs) | |
94 | human | 445571 | CBWD3 | COBW domain containing 3 | XR_001746304.1 | 38.5% | (many diffs) | |
95 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_427073.2 | 38.3% | (many diffs) | |
96 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746361.1 | 38.2% | (many diffs) | |
97 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746241.2 | 36.8% | (many diffs) | |
98 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746362.1 | 35.8% | (many diffs) | |
99 | human | 644019 | CBWD6 | COBW domain containing 6 | XM_017015034.1 | 35% | 32.8% | (many diffs) |
100 | human | 644019 | CBWD6 | COBW domain containing 6 | XR_001746363.1 | 34.8% | (many diffs) | |
101 | human | 150472 | CBWD2 | COBW domain containing 2 | XR_002959242.1 | 34.2% | (many diffs) | |
102 | human | 220869 | CBWD5 | COBW domain containing 5 | NR_104600.1 | 24.4% | (many diffs) | |
103 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956766.1 | 23.4% | (many diffs) | |
104 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746233.1 | 23.2% | (many diffs) | |
105 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746235.1 | 23% | (many diffs) | |
106 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_001746231.1 | 22.8% | (many diffs) | |
107 | human | 220869 | CBWD5 | COBW domain containing 5 | XR_002956767.1 | 20.2% | (many diffs) | |
108 | human | 220869 | CBWD5 | COBW domain containing 5 | NM_001286836.1 | 17.9% | 16% | (many diffs) |
109 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NM_146097.3 | 75.9% | 73.1% | (many diffs) |
110 | mouse | 226043 | Cbwd1 | COBW domain containing 1 | NR_033744.1 | 45.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1143
- ORF length:
- 1077
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgta tttcaaacgt gccgctcggg cctttcccgt attgctcact ggtgctggga 121 agacaacact tctgaactat attttgacag agcaacatag taaaagagta gcggtcattt 181 taaatgaatt tggggaagga agtgcgctgg agaaatcctt agctgtcagc caaggtggag 241 agctctatga agagtggctg gaacttagaa acggttgcct ctgctgttca gtgaaggaca 301 gtggccttag agctattgag aatttgatgc aaaagaaggg gaaatttgat tacatactgt 361 tagagaccac tggattagca gaccctggtg cagtggcttc tatgttttgg gttgatgctg 421 aattagggag tgatatttat cttgatggta tcataactat tgtggattca aaatatggat 481 taaaacattt aacagaagag aaacctgatg gccttatcaa tgaagctact aggcaagttg 541 ctttggcaga tgccattctc attaataaaa cagacctggt tccagaagaa gatgtaaaga 601 aattaagaac gacaattaga tccataaatg gactaggaca aatcttagaa acacaaagat 661 caagagttga tctctctaat gtattagatc ttcatgcctt tgatagtctc tctggaataa 721 gtttgcagaa aaaacttcag catgtgccag gaacacaacc tcaccttgat cagagtattg 781 ttacaatcac atttgaagta ccaggaaatg caaaggaaga acatcttaat atgtttattc 841 agaatctcct gtgggaaaag aatgtgagaa acaaggacaa tcactgcatg gaggtcataa 901 ggctgaaggg attggtgtca atcaaagaca aatcacaaca agtgattgtc cagggtgtcc 961 atgagctcta tgatctggag gagactccag tgagctggaa ggatgacact gagagaacaa 1021 atcgattggt cctccttggc agaaatttag ataaggatat ccttaaacag ctgtttatag 1081 ctactgtgac agaaacagaa aagcagtgga caacacgttt ccaagaagat caagtttgta 1141 catacccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc 1201 tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc 1261 tctggatta