Construct: ORF ccsbBroad304_08604

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015616.1_s304c1, BRDN0000412175
Derived from:
ccsbBroadEn_08604
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CBWD1 (55871)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08604
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55871 CBWD1 COBW domain containing 1 NM_018491.3 99.5% 99.4% (many diffs)
2 human 445571 CBWD3 COBW domain containing 3 NM_201453.3 98.9% 97.9% (many diffs)
3 human 220869 CBWD5 COBW domain containing 5 NM_001330668.1 98.9% 97.7% (many diffs)
4 human 150472 CBWD2 COBW domain containing 2 NM_172003.3 98.7% 97.9% (many diffs)
5 human 644019 CBWD6 COBW domain containing 6 NM_001085457.1 98.4% 97.2% (many diffs)
6 human 55871 CBWD1 COBW domain containing 1 NM_001145356.1 94.7% 94.6% (many diffs)
7 human 55871 CBWD1 COBW domain containing 1 XM_005251513.4 94.5% 94.4% (many diffs)
8 human 445571 CBWD3 COBW domain containing 3 XM_005277637.2 94% 93.1% (many diffs)
9 human 220869 CBWD5 COBW domain containing 5 NM_001363751.1 94% 92.9% (many diffs)
10 human 220869 CBWD5 COBW domain containing 5 XM_005272750.1 94% 92.9% (many diffs)
11 human 150472 CBWD2 COBW domain containing 2 NM_001330336.1 93.9% 93.1% (many diffs)
12 human 445571 CBWD3 COBW domain containing 3 NM_001291821.1 93.9% 92.9% (many diffs)
13 human 644019 CBWD6 COBW domain containing 6 XM_017015035.1 93.6% 92.4% (many diffs)
14 human 644019 CBWD6 COBW domain containing 6 XM_017015020.1 93.5% 92.1% (many diffs)
15 human 55871 CBWD1 COBW domain containing 1 XM_005251514.1 92.3% 92.1% (many diffs)
16 human 445571 CBWD3 COBW domain containing 3 XM_005277639.2 91.8% 90.8% (many diffs)
17 human 220869 CBWD5 COBW domain containing 5 XM_005272751.1 91.8% 90.6% (many diffs)
18 human 150472 CBWD2 COBW domain containing 2 NM_001330337.1 91.5% 90.8% (many diffs)
19 human 644019 CBWD6 COBW domain containing 6 XM_024447653.1 91.5% 90.3% (many diffs)
20 human 644019 CBWD6 COBW domain containing 6 XM_017015019.1 90.1% 88.7% (many diffs)
21 human 644019 CBWD6 COBW domain containing 6 XM_017015023.1 88.7% 87.3% (many diffs)
22 human 55871 CBWD1 COBW domain containing 1 NM_001145355.1 88.6% 86.5% (many diffs)
23 human 150472 CBWD2 COBW domain containing 2 NM_001330339.1 87.9% 85.2% (many diffs)
24 human 55871 CBWD1 COBW domain containing 1 XM_005251515.1 87.5% 87.3% (many diffs)
25 human 445571 CBWD3 COBW domain containing 3 XM_005277640.2 87% 86% (many diffs)
26 human 220869 CBWD5 COBW domain containing 5 NM_001024916.3 87% 85.8% (many diffs)
27 human 445571 CBWD3 COBW domain containing 3 XM_017014730.1 86.8% 85.8% (many diffs)
28 human 150472 CBWD2 COBW domain containing 2 XM_005263604.2 86.7% 86% (many diffs)
29 human 644019 CBWD6 COBW domain containing 6 XM_017015036.1 86.7% 85.5% (many diffs)
30 human 644019 CBWD6 COBW domain containing 6 XM_017015024.1 86.6% 85.3% (many diffs)
31 human 644019 CBWD6 COBW domain containing 6 XM_017015021.1 85.5% 84.1% (many diffs)
32 human 55871 CBWD1 COBW domain containing 1 XM_011517961.2 83.9% 81.7% (many diffs)
33 human 644019 CBWD6 COBW domain containing 6 XM_017015022.1 83.4% 82.1% (many diffs)
34 human 55871 CBWD1 COBW domain containing 1 XM_011517962.3 79.8% 79.7% (many diffs)
35 human 445571 CBWD3 COBW domain containing 3 XM_006717116.1 79.4% 78.9% (many diffs)
36 human 220869 CBWD5 COBW domain containing 5 XM_006716914.1 79.4% 78.7% (many diffs)
37 human 150472 CBWD2 COBW domain containing 2 XM_011510667.1 79.2% 78.7% (many diffs)
38 human 644019 CBWD6 COBW domain containing 6 XM_017015025.1 78.8% 77.5% (many diffs)
39 human 445571 CBWD3 COBW domain containing 3 XR_001746301.1 72.4% (many diffs)
40 human 220869 CBWD5 COBW domain containing 5 XM_017014455.1 72.4% 71.6% (many diffs)
41 human 644019 CBWD6 COBW domain containing 6 XM_017015026.1 71.5% 70.7% (many diffs)
42 human 445571 CBWD3 COBW domain containing 3 XR_001746303.1 69.2% (many diffs)
43 human 220869 CBWD5 COBW domain containing 5 XM_017014456.1 68% 67% (many diffs)
44 human 220869 CBWD5 COBW domain containing 5 XM_024447453.1 68% 67% (many diffs)
45 human 644019 CBWD6 COBW domain containing 6 XM_017015027.1 67.5% 62.1% (many diffs)
46 human 445571 CBWD3 COBW domain containing 3 XR_001746302.1 66.7% (many diffs)
47 human 220869 CBWD5 COBW domain containing 5 XR_001746234.1 65.1% (many diffs)
48 human 220869 CBWD5 COBW domain containing 5 XR_428504.1 64.9% (many diffs)
49 human 55871 CBWD1 COBW domain containing 1 XR_001746352.1 64% (many diffs)
50 human 220869 CBWD5 COBW domain containing 5 XR_001746232.1 63.4% (many diffs)
51 human 150472 CBWD2 COBW domain containing 2 XM_024452717.1 63.2% 62.7% (many diffs)
52 human 644019 CBWD6 COBW domain containing 6 XM_017015030.1 62.7% 57.4% (many diffs)
53 human 445571 CBWD3 COBW domain containing 3 XR_001746299.1 62.7% (many diffs)
54 human 55871 CBWD1 COBW domain containing 1 XM_011517963.1 62.3% 62.2% 0_1ins444;132A>G;401C>N
55 human 220869 CBWD5 COBW domain containing 5 XR_002956769.1 61.8% (many diffs)
56 human 445571 CBWD3 COBW domain containing 3 XR_001746297.1 61.6% (many diffs)
57 human 150472 CBWD2 COBW domain containing 2 NR_138473.1 61.2% (many diffs)
58 human 220869 CBWD5 COBW domain containing 5 XM_017014457.1 60.9% 60% (many diffs)
59 human 644019 CBWD6 COBW domain containing 6 XM_017015028.1 60.4% 59.2% (many diffs)
60 human 55871 CBWD1 COBW domain containing 1 XM_005251517.5 60.3% 59.3% (many diffs)
61 human 220869 CBWD5 COBW domain containing 5 XR_001746237.2 60.3% (many diffs)
62 human 55871 CBWD1 COBW domain containing 1 XM_017014925.1 59.1% 59.4% (many diffs)
63 human 644019 CBWD6 COBW domain containing 6 XM_017015029.2 59.1% 58.2% (many diffs)
64 human 445571 CBWD3 COBW domain containing 3 XR_001746300.1 58.8% (many diffs)
65 human 220869 CBWD5 COBW domain containing 5 XM_017014458.1 58.7% 58.4% (many diffs)
66 human 220869 CBWD5 COBW domain containing 5 XR_428503.2 58.6% (many diffs)
67 human 644019 CBWD6 COBW domain containing 6 XR_001746360.1 58.3% (many diffs)
68 human 150472 CBWD2 COBW domain containing 2 NR_138474.1 58.2% (many diffs)
69 human 220869 CBWD5 COBW domain containing 5 XR_002956768.1 57.8% (many diffs)
70 human 445571 CBWD3 COBW domain containing 3 XR_002956784.1 55.8% (many diffs)
71 human 150472 CBWD2 COBW domain containing 2 NM_001330340.1 55% 53.6% (many diffs)
72 human 150472 CBWD2 COBW domain containing 2 NM_001330342.1 55% 53.6% (many diffs)
73 human 220869 CBWD5 COBW domain containing 5 XM_017014459.1 54.9% 53.6% (many diffs)
74 human 644019 CBWD6 COBW domain containing 6 XM_017015032.1 54.8% 53.2% (many diffs)
75 human 445571 CBWD3 COBW domain containing 3 XM_011518706.2 54.8% 53.6% (many diffs)
76 human 445571 CBWD3 COBW domain containing 3 XR_929802.1 54.5% (many diffs)
77 human 644019 CBWD6 COBW domain containing 6 XM_024447652.1 54.5% 52.8% (many diffs)
78 human 55871 CBWD1 COBW domain containing 1 XM_011517964.3 53% 52% (many diffs)
79 human 644019 CBWD6 COBW domain containing 6 XM_017015031.1 52.5% 50.9% (many diffs)
80 human 150472 CBWD2 COBW domain containing 2 XR_244814.2 52.4% (many diffs)
81 human 220869 CBWD5 COBW domain containing 5 XR_001746239.1 51.8% (many diffs)
82 human 220869 CBWD5 COBW domain containing 5 XR_001746240.1 50.7% (many diffs)
83 human 644019 CBWD6 COBW domain containing 6 XR_001746359.1 50.3% (many diffs)
84 human 445571 CBWD3 COBW domain containing 3 XR_929803.1 50.2% (many diffs)
85 human 55871 CBWD1 COBW domain containing 1 XR_001746353.1 49.5% (many diffs)
86 human 220869 CBWD5 COBW domain containing 5 XR_001746238.1 49% (many diffs)
87 human 445571 CBWD3 COBW domain containing 3 XR_929804.1 48.7% (many diffs)
88 human 150472 CBWD2 COBW domain containing 2 XR_922864.1 47.9% (many diffs)
89 human 220869 CBWD5 COBW domain containing 5 XM_017014461.1 47.9% 46.6% (many diffs)
90 human 445571 CBWD3 COBW domain containing 3 XM_017014732.1 47.8% 46.6% (many diffs)
91 human 445571 CBWD3 COBW domain containing 3 XR_001746298.1 47.4% (many diffs)
92 human 150472 CBWD2 COBW domain containing 2 XR_427073.2 46.7% (many diffs)
93 human 644019 CBWD6 COBW domain containing 6 XR_001746361.1 46.3% (many diffs)
94 human 445571 CBWD3 COBW domain containing 3 XR_001746304.1 46% (many diffs)
95 human 644019 CBWD6 COBW domain containing 6 XM_017015033.1 45.9% 44.4% (many diffs)
96 human 220869 CBWD5 COBW domain containing 5 XR_001746241.2 45.1% (many diffs)
97 human 644019 CBWD6 COBW domain containing 6 XR_001746362.1 44.5% (many diffs)
98 human 220869 CBWD5 COBW domain containing 5 NM_001286835.1 43.4% 38.8% (many diffs)
99 human 644019 CBWD6 COBW domain containing 6 XR_001746363.1 43.4% (many diffs)
100 human 150472 CBWD2 COBW domain containing 2 XR_002959242.1 37.7% (many diffs)
101 human 644019 CBWD6 COBW domain containing 6 XM_017015034.1 31.8% 29.6% (many diffs)
102 human 220869 CBWD5 COBW domain containing 5 NM_001286836.1 28.4% 28.3% 51G>A;233C>T;339_340ins846
103 human 220869 CBWD5 COBW domain containing 5 XR_002956766.1 26.2% (many diffs)
104 human 220869 CBWD5 COBW domain containing 5 XR_001746233.1 25.9% (many diffs)
105 human 220869 CBWD5 COBW domain containing 5 XR_001746235.1 25.8% (many diffs)
106 human 220869 CBWD5 COBW domain containing 5 XR_001746231.1 25.5% (many diffs)
107 human 220869 CBWD5 COBW domain containing 5 XR_002956767.1 22.6% (many diffs)
108 mouse 226043 Cbwd1 COBW domain containing 1 NM_146097.3 84% 80.6% (many diffs)
109 mouse 226043 Cbwd1 COBW domain containing 1 NR_033744.1 49.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1254
ORF length:
1185
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gttaccggct gttggatctg tggatgagga agaggatcct gcggaggaag
121attgtcctga attggttccc attgagacga cgcaaagcga ggaggaggaa aagtctggcc
181tcggcgccaa gatcccagtc acaattatca ccgggtattt aggtgctggg aagacaacac
241ttctgaacta tattttgaca gagcaacata gtaaaagagt agcggtcatt ttaaatgaat
301ttggggaagg aagtgcgctg gagaaatcct tagctgtcag ccaaggtgga gagctctatg
361aagagtggct ggaacttaga aacggttgcc tctgctgttc agtgaaggac agtggcctta
421gagctattga gaatttgatg caaaagaagg ggaaatttga ttacatactg ttagagacca
481ctggattagc agaccctggt gcagtggctt ctatgttttg ggttgatgct gaattaggga
541gtgatattta tcttgatggt atcataacta ttgtggattc aaaatatgga ttaaaacatt
601taacagaaga gaaacctgat ggccttatca atgaagctac taggcaagtt gctttggcag
661atgccattct cattaataaa acagacctgg ttccagaaga agatgtaaag aaattaagaa
721cgacaattag atccataaat ggactaggac aaatcttaga aacacaaaga tcaagagttg
781atctctctaa tgtattagat cttcatgcct ttgatagtct ctctggaata agtttgcaga
841aaaaacttca gcatgtgcca ggaacacaac ctcaccttga tcagagtatt gttacaatca
901catttgaagt acnaggaaat gcaaaggaag aacatcttaa tatgtttatt cagaatctcc
961tgtgggaaaa gaatgtgaga aacaaggaca atcactgcat ggaggtcata aggctgaagg
1021gattggtgtc aatcaaagac aaatcacaac aagtgattgt ccagggtgtc catgagctct
1081atgatctgga ggagactcca gtgagctgga aggatgacac tgagagaaca aatcgattgg
1141tcctccttgg cagaaattta gataaggata tccttaaaca gctgtttata gctactgtga
1201cagaaacaga aaagcagtgg acaacacgtt tccaagaaga tcaagtttgt acattgccaa
1261ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1321cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)