Construct: ORF ccsbBroad304_08703

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011437.1_s304c1, BRDN0000399921
Derived from:
ccsbBroadEn_08703
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAMK1D (57118)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08703
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57118 CAMK1D calcium/calmodulin dependen... NM_153498.4 99.9% 100% 948C>G
2 human 57118 CAMK1D calcium/calmodulin dependen... XM_011519591.3 94.6% 89.6% (many diffs)
3 human 57118 CAMK1D calcium/calmodulin dependen... XM_006717482.3 93.9% 86.1% 948C>G;995_996ins43;1086_1087ins26
4 human 57118 CAMK1D calcium/calmodulin dependen... XM_006717483.4 91.4% 90.6% 948C>G;1040_1043delGTGC;1065_1066ins94
5 human 57118 CAMK1D calcium/calmodulin dependen... NM_020397.4 90.8% 90.3% (many diffs)
6 human 57118 CAMK1D calcium/calmodulin dependen... XM_011519592.3 81.1% 80.3% (many diffs)
7 human 57118 CAMK1D calcium/calmodulin dependen... XM_011519593.3 80.6% 80.5% 0_1ins222;2T>A;726C>G
8 human 57118 CAMK1D calcium/calmodulin dependen... XM_011519595.3 74.7% 74.8% 0_1ins291;657C>G
9 human 57118 CAMK1D calcium/calmodulin dependen... XM_017016438.2 74.7% 74.8% 0_1ins291;657C>G
10 human 57118 CAMK1D calcium/calmodulin dependen... XM_024448087.1 74.7% 74.8% 0_1ins291;657C>G
11 human 57118 CAMK1D calcium/calmodulin dependen... NM_001351032.2 65.8% 65.1% (many diffs)
12 human 57118 CAMK1D calcium/calmodulin dependen... XM_011519594.3 64.3% 64.4% 0_1ins411;537C>G
13 mouse 227541 Camk1d calcium/calmodulin-dependen... NM_177343.4 90.6% 97.6% (many diffs)
14 mouse 227541 Camk1d calcium/calmodulin-dependen... XM_011238973.2 85.6% 89% (many diffs)
15 mouse 227541 Camk1d calcium/calmodulin-dependen... NM_001290375.1 85.3% 85% (many diffs)
16 mouse 227541 Camk1d calcium/calmodulin-dependen... NM_001290376.1 85.3% 87.4% (many diffs)
17 mouse 227541 Camk1d calcium/calmodulin-dependen... XM_006497470.3 83% 89.6% (many diffs)
18 mouse 227541 Camk1d calcium/calmodulin-dependen... XM_006497469.3 82.7% 89.6% (many diffs)
19 mouse 227541 Camk1d calcium/calmodulin-dependen... XM_006497471.3 80.7% 86.2% (many diffs)
20 mouse 227541 Camk1d calcium/calmodulin-dependen... NM_001290374.1 79.3% 78.4% (many diffs)
21 mouse 227541 Camk1d calcium/calmodulin-dependen... XM_006497473.3 58.5% 62% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1221
ORF length:
1155
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ccgggagaac ggcgagagca gctcctcctg gaaaaagcaa gctgaagaca
121tcaagaagat cttcgagttc aaagagaccc tcggaaccgg ggccttttcc gaagtggttt
181tagctgaaga gaaggcaact ggcaagctct ttgctgtgaa gtgtatccct aagaaggcgc
241tgaagggcaa ggaaagcagc atagagaatg agatagccgt cctgagaaag attaagcatg
301aaaatattgt tgccctggaa gacatttatg aaagcccaaa tcacctgtac ttggtcatgc
361agctggtgtc cggtggagag ctgtttgacc ggatagtgga gaaggggttt tatacagaga
421aggatgccag cactctgatc cgccaagtct tggacgccgt gtactatctc cacagaatgg
481gcatcgtcca cagagacctc aagcccgaaa atctcttgta ctacagtcaa gatgaggagt
541ccaaaataat gatcagtgac tttggattgt caaaaatgga gggcaaagga gatgtgatgt
601ccactgcctg tggaactcca ggctatgtcg ctcctgaagt cctcgcccag aaaccttaca
661gcaaagccgt tgactgctgg tccatcggag tgattgccta catcttgctc tgcggctacc
721ctccttttta tgatgaaaat gactccaagc tctttgagca gatcctcaag gcggaatatg
781agtttgactc tccctactgg gatgacatct ccgactctgc aaaagacttc attcggaacc
841tgatggagaa ggacccgaat aaaagataca cgtgtgagca ggcagctcgg cacccatgga
901tcgctggtga cacagccctc aacaaaaaca tccacgagtc cgtcagcgcc cagatccgga
961aaaactttgc caagagcaaa tggagacaag catttaatgc cacggccgtc gtgagacata
1021tgagaaaact acacctcggc agcagcctgg acagttcaaa tgcaagtgtt tcgagcagcc
1081tcagtttggc cagccaaaaa gactgtctgg caccttccac gctctgtagt ttcatttctt
1141cttcgtcggg ggtctcagga gttggagccg agcggagacc caggcccacc actgtgacgg
1201cagtgcactc tggaagcaag tgcccaactt tcttgtacaa agtggttggt aagcctatcc
1261ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1321ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)