Transcript: Mouse NM_001290376.1

Mus musculus calcium/calmodulin-dependent protein kinase ID (Camk1d), transcript variant 4, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Camk1d (227541)
Length:
6742
CDS:
66..1199

Additional Resources:

NCBI RefSeq record:
NM_001290376.1
NBCI Gene record:
Camk1d (227541)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001290376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000221211 CCGTATACTATCTCCACAGAA pLKO.1 433 CDS 100% 4.950 6.930 N Camk1d n/a
2 TRCN0000362174 GTTACATGACCTCTATCATTT pLKO_005 1647 3UTR 100% 13.200 10.560 N Camk1d n/a
3 TRCN0000221210 GCCGGAGAATCTCTTATACTA pLKO.1 479 CDS 100% 5.625 4.500 N Camk1d n/a
4 TRCN0000362094 TGTTGCCTTGGAAGATATTTA pLKO_005 284 CDS 100% 15.000 10.500 N Camk1d n/a
5 TRCN0000362173 CAAATGGAGACAAGCGTTTAA pLKO_005 953 CDS 100% 13.200 9.240 N Camk1d n/a
6 TRCN0000221213 CAGATCCTCAAGGCAGAATAT pLKO.1 735 CDS 100% 13.200 9.240 N Camk1d n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2906 3UTR 100% 4.950 2.475 Y KAAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001290376.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08703 pDONR223 100% 85.3% 87.4% None (many diffs) n/a
2 ccsbBroad304_08703 pLX_304 0% 85.3% 87.4% V5 (many diffs) n/a
3 TRCN0000472635 AAAGGACCTGACCAGAGAAGTGCC pLX_317 33.2% 85.3% 87.4% V5 (many diffs) n/a
4 ccsbBroadEn_15118 pDONR223 0% 85.3% 87.4% None (many diffs) n/a
5 ccsbBroad304_15118 pLX_304 0% 85.3% 87.4% V5 (many diffs) n/a
6 TRCN0000468350 TATCTGAATCAGCCTGATTTTGGG pLX_317 33.2% 85.3% 87.4% V5 (many diffs) n/a
7 TRCN0000489121 ACCATGACATTCTAAAGTACAACG pLX_317 28.3% 76.9% 78.8% V5 (not translated due to prior stop codon) (many diffs) n/a
Download CSV