Construct: ORF ccsbBroad304_08954

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016469.1_s304c1, BRDN0000411721
Derived from:
ccsbBroadEn_08954
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLIP4 (79745)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08954
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79745 CLIP4 CAP-Gly domain containing l... NM_001287527.2 99.9% 100% 516A>G
2 human 79745 CLIP4 CAP-Gly domain containing l... NM_024692.6 99.9% 100% 516A>G
3 human 79745 CLIP4 CAP-Gly domain containing l... XM_005264562.2 99.9% 100% 516A>G
4 human 79745 CLIP4 CAP-Gly domain containing l... XM_005264563.1 99.9% 100% 516A>G
5 human 79745 CLIP4 CAP-Gly domain containing l... XM_006712104.2 99.9% 100% 516A>G
6 human 79745 CLIP4 CAP-Gly domain containing l... XM_011533109.1 99.9% 100% 516A>G
7 human 79745 CLIP4 CAP-Gly domain containing l... XM_017004958.1 99.9% 100% 516A>G
8 human 79745 CLIP4 CAP-Gly domain containing l... XM_017004959.2 85.9% 85.2% (many diffs)
9 human 79745 CLIP4 CAP-Gly domain containing l... NM_001287528.1 84.8% 84.9% 516A>G;1797_1797delGins319
10 human 79745 CLIP4 CAP-Gly domain containing l... XM_011533110.1 84.7% 84.8% 0_1ins321;195A>G
11 human 79745 CLIP4 CAP-Gly domain containing l... XM_006712105.4 84.4% 81.7% 516A>G;1723_1724ins73;1788_1789ins254
12 human 79745 CLIP4 CAP-Gly domain containing l... NR_109844.1 73.5% (many diffs)
13 human 79745 CLIP4 CAP-Gly domain containing l... XR_939718.3 49.5% (many diffs)
14 human 79745 CLIP4 CAP-Gly domain containing l... XR_939717.3 43% (many diffs)
15 human 79745 CLIP4 CAP-Gly domain containing l... XR_001738944.2 42.6% (many diffs)
16 human 79745 CLIP4 CAP-Gly domain containing l... XR_002959339.1 39.4% (many diffs)
17 human 79745 CLIP4 CAP-Gly domain containing l... XR_939719.3 32.2% (many diffs)
18 mouse 78785 Clip4 CAP-GLY domain containing l... NM_030179.3 82.4% 87.5% (many diffs)
19 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525143.3 82.4% 87.5% (many diffs)
20 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525144.2 82.4% 87.5% (many diffs)
21 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525145.3 82.4% 87.5% (many diffs)
22 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525146.1 82.4% 87.5% (many diffs)
23 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525148.3 77.7% 82.6% (many diffs)
24 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525149.2 77.7% 82.6% (many diffs)
25 mouse 78785 Clip4 CAP-GLY domain containing l... NM_001271484.1 70.1% 74.1% (many diffs)
26 mouse 78785 Clip4 CAP-GLY domain containing l... NM_175378.1 65.3% 69.3% (many diffs)
27 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525154.2 65.3% 69.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2184
ORF length:
2115
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gaccatagag gaccttccag attttccatt agaaggaaat cctttgtttg
121gaagataccc atttatattt tctgcttctg ataccccagt tatcttttcc atttctgcag
181caccaatgcc ttcagactgt gaattttctt tctttgatcc taatgatgca tcatgccagg
241aaattctttt tgatcccaaa acttcagttt cagaattatt tgccattttg agacagtggg
301ttcctcaggt ccaacaaaac attgacatta ttggaaatga gattcttaag agaggttgca
361atgtgaatga tagagatgga ttgacagata tgactctttt acattatacc tgcaaatctg
421gagctcatgg tattggtgat gtggaaacag ctgtaaaatt tgcaactcag cttattgacc
481tgggagcaga cattagtttg cggagtcgct ggacaaacat gaatgctttg cattatgctg
541cttattttga tgtccctgaa cttataagag tgattttgaa aacgtcgaaa ccaaaagatg
601tggatgccac ttgcagtgat tttaattttg gaacagcttt gcatattgca gcatacaact
661tgtgtgcagg tgctgtgaag tgcctcttgg agcagggagc aaatcctgca tttaggaatg
721acaaaggaca gatccctgct gatgttgttc cagacccagt agatatgccg ttagagatgg
781ctgacgccgc agccactgct aaggaaatca agcagatgct tctagatgcg gtgcctctgt
841catgtaacat ctcaaaggcc atgctcccaa attatgatca tgtcactggc aaggcaatgc
901ttacgtcact tggcctgaag ttgggggatc gtgttgttat tgcaggacag aaggttggta
961cattaagatt ttgtggaaca actgaatttg caagtgggca gtgggctggc attgaactgg
1021atgaaccaga aggaaaaaat aatggaagtg ttggaaaagt ccagtacttt aaatgtgccc
1081ccaagtatgg tatttttgca cctctttcaa agataagtaa agcaaaaggt cgaaggaaga
1141atataacaca cactccttct acaaaagctg ctgtacctct catcaggtcc cagaaaattg
1201acgtagctca tgtgacgtca aaagtaaata ctggattaat gacatcaaaa aaagatagtg
1261cttctgagtc aacactttca ttgcctcctg gtgaagaact taaaactgtg acagagaaag
1321atgttgccct gcttggatct gtcagcagct gctcctctac atcttctttg gaacacagac
1381agagctaccc caagaaacag aatgcaatca gcagtaacaa gaagacaatg agcaaaagcc
1441cttccctttc atccagagcc agtgctggtt tgaattcctc agcaacatct acagcaaata
1501atagccgttg cgagggggaa ctccgcctcg gagagagagt gttagtggta ggacagagac
1561tgggcaccat taggttcttt gggacaacaa acttcgctcc aggatattgg tatggtatag
1621agcttgaaaa accccatggc aagaatgatg gttcagttgg aggtgtgcag tattttagct
1681gttctccaag atatggaata tttgctcccc catccagggt gcaaagagta acagattccc
1741tggataccct ttcagaaatt tcttcaaata aacagaacca ttcttatcct ggttttagga
1801gaagttttag cacaacttct gcttcttccc aaaaggagat taacagaaga aatgcttttt
1861ccaaatcgaa agctgctttg cgtcgcagtt ggagcagcac ccccaccgca ggtggcattg
1921aagggagcgt gaagctgcac gaggggtctc aggtcctgct cacgagctcc aatgagatgg
1981gtactgttag gtatgtgggc cccactgact ttgcttcagg tatctggctt ggacttgagc
2041tccgaagcgc caagggaaaa aatgatgggt cagtgggtga caagcgctat ttcacctgta
2101agccgaacca tggagtctta gttcgaccga gcagagtgac ctatcgggga attaatgggt
2161caaaacttgt ggatgagaat tgtttgccaa ctttcttgta caaagtggtt ggtaagccta
2221tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2281gcgttaagtc gacaatcaac ctctggatta

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