Construct: ORF ccsbBroad304_11723

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016492.1_s304c1, BRDN0000410429
Derived from:
ccsbBroadEn_11723
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
VPS39 (23339)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11723
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23339 VPS39 VPS39 subunit of HOPS complex XM_017022038.1 95.4% 95.4% 1_102del
2 human 23339 VPS39 VPS39 subunit of HOPS complex NM_015289.4 81.9% 81.9% 1_474del
3 human 23339 VPS39 VPS39 subunit of HOPS complex NM_001301138.2 80.9% 80.9% 1_507del
4 human 23339 VPS39 VPS39 subunit of HOPS complex XM_017022037.1 79.7% 78.3% (many diffs)
5 human 23339 VPS39 VPS39 subunit of HOPS complex XM_011521404.2 79.5% 77.3% 1_474del;2550_2619del;2688_2689insTGACACT
6 human 23339 VPS39 VPS39 subunit of HOPS complex XM_017022036.1 78.7% 77.4% (many diffs)
7 human 23339 VPS39 VPS39 subunit of HOPS complex XM_011521403.2 78.5% 76.3% 1_507del;2583_2652del;2721_2722insTGACACT
8 human 23339 VPS39 VPS39 subunit of HOPS complex XM_017022039.1 71.9% 71.5% (many diffs)
9 human 23339 VPS39 VPS39 subunit of HOPS complex XR_001751181.1 42.8% 1_642del;2063_2237del;2969_5024del
10 human 23339 VPS39 VPS39 subunit of HOPS complex XR_001751180.1 42.7% 1_650del;2071_2245del;2977_5032del
11 mouse 269338 Vps39 VPS39 HOPS complex subunit XM_006499598.3 76.6% 81.5% (many diffs)
12 mouse 269338 Vps39 VPS39 HOPS complex subunit NM_178851.3 74.6% 79.4% (many diffs)
13 mouse 269338 Vps39 VPS39 HOPS complex subunit NM_147153.3 73.7% 78.4% (many diffs)
14 mouse 269338 Vps39 VPS39 HOPS complex subunit XM_006499599.1 63.8% 67.9% (many diffs)
15 mouse 269338 Vps39 VPS39 HOPS complex subunit XR_001782888.1 45.6% (many diffs)
16 mouse 269338 Vps39 VPS39 HOPS complex subunit NR_027618.1 44.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2217
ORF length:
2151
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gtggtgtgaa aattctatct gtgtgggttt caagagagac tactacctaa
121taagggtgga tggaaagggg tccatcaaag agctctttcc aacaggaaaa cagctggagc
181ccttagttgc acctctggca gatggaaaag tggctgtggg ccaggatgat ctcaccgtgg
241tactcaatga ggaagggatc tgcacacaga aatgtgccct gaactggacg gacataccag
301tggccatgga gcaccagcct ccctacatca ttgcagtgtt gcctcgatat gttgagatcc
361gaacatttga accgaggctt ctggtccaaa gcattgaatt gcaaaggccc cgtttcatta
421cctcaggagg atcaaacatt atctatgtgg ccagcaatca ttttgtttgg agactcatcc
481ctgtccccat ggcaacccaa atccaacaac ttctccagga caagcagttt gaattggctc
541tgcagctcgc agaaatgaaa gatgattctg acagtgaaaa gcagcaacaa attcatcaca
601tcaagaactt gtatgccttc aacctcttct gccagaagcg ttttgatgag tccatgcagg
661tctttgctaa acttggcaca gatcccaccc atgtgatggg cctgtaccct gacctgctgc
721ccacagacta cagaaagcag ttgcagtatc ccaacccatt gcctgtgctc tccggggctg
781aattggagaa ggctcactta gctctgattg actacctgac acagaaacga agtcaattgg
841taaagaagct gaatgactct gatcaccagt caagcacctc accgctcatg gaaggcactc
901ccaccatcaa atccaagaag aagctgctac aaatcatcga caccaccctg ctcaagtgct
961atctccatac aaatgtggcc ctggtggccc ccttgctacg cctggagaac aatcactgcc
1021acatcgagga gagcgagcac gtgctaaaga aggctcacaa gtacagtgag cttatcatcc
1081tgtatgagaa gaaggggctc cacgagaaag ctctgcaggt gctcgtggac cagtccaaga
1141aagccaactc ccctctgaaa ggccacgaga ggacagtgca gtatctgcag catctgggca
1201cagaaaacct gcatttgatt ttctcctact cagtgtgggt gctgagagac ttcccagaag
1261atggcctgaa gatatttact gaagatctcc cggaagtgga gtctctgcca cgtgatcgag
1321tcctcggctt cttaatagag aattttaagg gtctggctat tccttatctg gaacacatca
1381tccatgtttg ggaggagaca ggctctcggt tccacaactg cctgatccag ctatactgtg
1441agaaggtgca aggtctgatg aaggagtatc tcctgtcctt ccctgcaggc aaaaccccag
1501tcccagctgg agaggaagag ggtgagctgg gagaataccg gcaaaagctc ctcatgttct
1561tggagatttc cagctactat gatccaggcc ggctcatctg tgattttccc tttgatggcc
1621tcttagaaga acgagctctc ctgttggggc gcatggggaa acatgaacaa gctcttttca
1681tttatgtcca catcttgaag gatacaagga tggctgagga gtactgccac aaacactatg
1741accgaaacaa agatggcaac aaagatgtgt atctgtccct gcttcggatg tacctgtcgc
1801cccccagcat tcactgcctg gggccaatca agctggaact actggagcca aaagccaacc
1861tccaggccgc tctgcaggtc ctcgagctac accacagcaa actggacacc accaaggccc
1921tcaaccttct gccagcaaac actcagatca atgacatacg catcttcctg gaaaaggtct
1981tggaagaaaa tgcacaaaag aaacggttca atcaagtgct caagaacctt ctccatgcag
2041aattcctgag ggtccaggaa gagcggattt tacaccagca ggtgaagtgc atcatcacag
2101aggagaaggt gtgcatggtg tgtaagaaga agattgggaa cagtgcattt gcaagatacc
2161ccaatggagt ggtcgtccat tacttctgtt ccaaagaggt aaacccagct gacacttgcc
2221caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
2281ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
2341tta

Download FASTA (ORF) (Full)