Construct: ORF ccsbBroad304_12029
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012664.1_s304c1, BRDN0000460806
- Derived from:
- ccsbBroadEn_12029
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PCBP3 (54039)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12029
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348242.1 | 92.2% | 92.3% | 327T>C;503_577del;622_624delCAG |
2 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452117.1 | 92.2% | 92.3% | 327T>C;503_577del;622_624delCAG |
3 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452118.1 | 92.2% | 92.3% | 327T>C;503_577del;622_624delCAG |
4 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001130141.1 | 90.6% | 90.7% | 1_96del;423T>C |
5 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452116.1 | 90.3% | 90.4% | 1_96del;423T>C;643_645delCAG |
6 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452119.1 | 86.8% | 86.6% | (many diffs) |
7 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452120.1 | 84.5% | 84.6% | (many diffs) |
8 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348238.2 | 84.5% | 84.5% | 1_96del;423T>C;599_673del |
9 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452115.1 | 84.5% | 84.5% | 1_96del;423T>C;599_673del |
10 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_020528.2 | 84.2% | 84.3% | (many diffs) |
11 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452113.1 | 84.2% | 84.3% | (many diffs) |
12 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452114.1 | 84.2% | 84.3% | (many diffs) |
13 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348241.1 | 81.8% | 81.9% | (many diffs) |
14 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348239.2 | 79.5% | 79.6% | 1_96del;423T>C;601_744del |
15 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348240.2 | 79.3% | 79.4% | (many diffs) |
16 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452111.1 | 79.3% | 79.4% | (many diffs) |
17 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348243.1 | 79% | 79.1% | (many diffs) |
18 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348244.2 | 78.8% | 78.9% | (many diffs) |
19 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NM_001348245.2 | 74.4% | 74.5% | (many diffs) |
20 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452109.1 | 74.4% | 74.5% | 1_321del;648T>C |
21 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452112.1 | 74.2% | 74.3% | (many diffs) |
22 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452108.1 | 74.2% | 74.3% | 1_321del;648T>C;868_870delCAG |
23 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452101.1 | 70.2% | 70.3% | 1_321del;648T>C;824_898del |
24 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452099.1 | 70.1% | 70.1% | (many diffs) |
25 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452095.1 | 68.4% | 68.4% | (many diffs) |
26 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452093.1 | 66.8% | 66.8% | 1_321del;648T>C;826_969del |
27 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452092.1 | 66.6% | 66.7% | (many diffs) |
28 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452103.1 | 65.7% | 65.8% | (many diffs) |
29 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452102.1 | 65.6% | 65.6% | (many diffs) |
30 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452096.1 | 64.3% | 60.5% | (many diffs) |
31 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452098.1 | 62.5% | 62.6% | (many diffs) |
32 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452097.1 | 62.4% | 62.4% | (many diffs) |
33 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452094.1 | 58% | 53.6% | (many diffs) |
34 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452100.1 | 56.5% | 52.7% | (many diffs) |
35 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452110.1 | 52.5% | 52.2% | (many diffs) |
36 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452090.1 | 49.7% | 39% | (many diffs) |
37 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452091.1 | 49.7% | 39% | (many diffs) |
38 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452104.1 | 47.7% | 42.7% | (many diffs) |
39 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452105.1 | 47.7% | 42.7% | (many diffs) |
40 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452106.1 | 47.7% | 42.7% | (many diffs) |
41 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452107.1 | 47.7% | 42.7% | (many diffs) |
42 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452088.1 | 46.9% | 36.7% | (many diffs) |
43 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452089.1 | 46.9% | 36.7% | (many diffs) |
44 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958616.1 | 46.1% | (many diffs) | |
45 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958612.1 | 45.2% | (many diffs) | |
46 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958610.1 | 44.3% | (many diffs) | |
47 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NR_145492.1 | 43.4% | (many diffs) | |
48 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958604.1 | 43.3% | (many diffs) | |
49 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452086.1 | 42.3% | 33.1% | (many diffs) |
50 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XM_024452087.1 | 42.3% | 33.1% | (many diffs) |
51 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958607.1 | 40.5% | (many diffs) | |
52 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958606.1 | 40.4% | (many diffs) | |
53 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958615.1 | 40.4% | (many diffs) | |
54 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958613.1 | 40.4% | (many diffs) | |
55 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | NR_145493.2 | 38.3% | (many diffs) | |
56 | human | 54039 | PCBP3 | poly(rC) binding protein 3 | XR_002958609.1 | 37.9% | (many diffs) | |
57 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_011243517.2 | 80.3% | 86.1% | (many diffs) |
58 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | NM_001347216.1 | 78.5% | 84.3% | (many diffs) |
59 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | NM_021568.2 | 78.3% | 84% | (many diffs) |
60 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_017314038.1 | 78.3% | 84% | (many diffs) |
61 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513920.3 | 74% | 79.3% | (many diffs) |
62 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513916.3 | 73.8% | 79.1% | (many diffs) |
63 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513917.1 | 73.8% | 79.1% | (many diffs) |
64 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513918.1 | 73.8% | 79.1% | (many diffs) |
65 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513919.3 | 73.8% | 79.1% | (many diffs) |
66 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_011243516.2 | 73.8% | 79.1% | (many diffs) |
67 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_017314036.1 | 73.8% | 79.1% | (many diffs) |
68 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_017314037.1 | 73.8% | 79.1% | (many diffs) |
69 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513926.3 | 73.2% | 78.9% | (many diffs) |
70 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513925.3 | 73% | 78.7% | (many diffs) |
71 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513922.3 | 69% | 74.3% | (many diffs) |
72 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XM_006513921.3 | 68.8% | 74.1% | (many diffs) |
73 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_871722.2 | 38.6% | (many diffs) | |
74 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_871719.2 | 38.5% | (many diffs) | |
75 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_871720.2 | 38.3% | (many diffs) | |
76 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_001779566.1 | 38.1% | (many diffs) | |
77 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_380423.3 | 37.2% | (many diffs) | |
78 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_380422.3 | 36.9% | (many diffs) | |
79 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_380425.3 | 36.5% | (many diffs) | |
80 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_380424.3 | 36.2% | (many diffs) | |
81 | mouse | 59093 | Pcbp3 | poly(rC) binding protein 3 | XR_380420.3 | 35.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1005
- ORF length:
- 939
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga gtccaaggtc tcagaaggtg gcctgaatgt gaccctcacc atccgcctgc 121 tgatgcatgg aaaggaagtt ggaagcatca tcgggaagaa aggagaaact gtgaagaaga 181 tgcgtgagga gagtggtgca aggatcaaca tctcagaggg aaactgccca gagaggattg 241 tgaccatcac aggccccaca gacgccatct tcaaggcctt tgccatgatc gcatacaagt 301 ttgaggagga tatcatcaac tccatgagca acagccctgc caccagcaag cccccagtga 361 cgctgaggct ggtggtgcct gccagccagt gcgggtccct gatcggcaaa ggaggctcca 421 agatcaagga gatcagggag tccacaggtg cccaggtgca ggtggctggg gacatgctgc 481 ccaactccac ggagcgagcg gtgaccatct cggggacccc agatgccatc atccagtgcg 541 tcaagcagat ctgtgtggtc atgctggagg cctacacaat ccagggacag tatgccatcc 601 ctcacccgga tttgaccaag ctccaccagt tggccatgca gcaaaccccc tttcctcccc 661 tcggacagac caaccccgct ttccccggag aaaagctgcc tttacactcc tccgaagaag 721 ctcaaaatct gatgggccag tcatcaggtc tggacgccag cccaccggcc agcactcatg 781 agctcaccat tcccaatgat ctaataggct gcataattgg acgccaaggg accaaaatca 841 atgaaattcg acagatgtct ggagctcaga tcaaaatcgc caacgccacg gaagggtcct 901 cagagcgtca gatcaccatc acggggaccc cggccaacat cagccttgcc cagtatctca 961 tcaacgccag gctgacgtcc gaggtcaccg ggatgggcac gctgtaccca actttcttgt 1021 acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat 1081 gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a