Construct: ORF ccsbBroad304_12273

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009286.1_s304c1, BRDN0000403095
Derived from:
ccsbBroadEn_12273
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FGD6 (55785)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12273
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55785 FGD6 FYVE, RhoGEF and PH domain ... NM_018351.4 26.1% 25.8% (many diffs)
2 mouse 13998 Fgd6 FYVE, RhoGEF and PH domain ... XM_006513214.3 52% 55.6% (many diffs)
3 mouse 13998 Fgd6 FYVE, RhoGEF and PH domain ... NM_053072.3 23.3% 24.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1194
ORF length:
1128
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag ccctcgctgt gctaatctgg ccctcaagca ctacctgctc aagccggttc
121agaggatccc ccagtacagg ctgttgctga cagattattt gaagaatctc atagaagatg
181ctggagatta cagagacact caagatgccc ttgctgttgt tgtagaggta gccaaccacg
241ccaatgacac catgaagcaa ggagacaact ttcagaaact tatgcaaatt cagtacagct
301taaatggaca ccatgaaatt gtgcagcctg gtcgggtttt tctcaaagaa ggaattctga
361tgaagctgtc tcggaaagtg atgcaacctc gaatgttttt cctgtttaat gatgccctgc
421tgtatacaac accagtgcag tctgggatgt ataaactgaa caacatgctc tcactggctg
481gaatgaaggt cagaaaacct acccaagaag cctatcagaa tgaattaaag attgaaagtg
541tagaacgttc cttcattctc tcagccagtt ctgccacaga aagggatgaa tggctagaag
601cgatttccag ggcaatagaa gagtatgcca agaaaagaat caccttctgt cctagtagga
661gtcttgatga ggcagactca gaaaataaag aagaagttag tcctcttgga tcgaaggctc
721ccatctggat tcctgatacc agagccacaa tgtgtatgat ctgcacaagc gaattcactc
781tcacctggag acgacaccac tgccgggcct gtggaaagat tgtatgccaa gcttgttcgt
841ctaataagta tggcttagat tacctgaaaa atcaaccagc aagagtatgt gaacattgtt
901tccaagaact gcagaaatta gatcaccagc actcccctag gattggatct cctggaaatc
961acaaatctcc ttcaagtgcc ttatcatcag tcttacatag cattccatca gggaggaaac
1021agaaaaaaat cccagctgct ctcaaagaag tatcagcaaa cacagaggat tcttctatga
1081gtggctactt gtacagatca aagggcaata aaaaaccctg gaaacacttt tggtttgtca
1141taaaaaataa agtactatat acatatgctg caagtgaggt aagatctgaa atctacccaa
1201ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1261cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)