Construct: ORF ccsbBroad304_12690
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014326.1_s304c1, BRDN0000406469
- Derived from:
- ccsbBroadEn_12690
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRABD (80305)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12690
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80305 | TRABD | TraB domain containing | NM_001320485.2 | 87.7% | 87.7% | 81_218del |
| 2 | human | 80305 | TRABD | TraB domain containing | NM_001320487.2 | 87.7% | 87.7% | 81_218del |
| 3 | human | 80305 | TRABD | TraB domain containing | NM_025204.4 | 87.7% | 87.7% | 81_218del |
| 4 | human | 80305 | TRABD | TraB domain containing | XM_017028944.1 | 87.7% | 87.7% | 81_218del |
| 5 | human | 80305 | TRABD | TraB domain containing | NM_001320488.2 | 86.9% | 87% | 81_218del;1128_1137delAGAGAAAAACinsG |
| 6 | human | 80305 | TRABD | TraB domain containing | XM_006724422.3 | 86.9% | 87% | 81_218del;1128_1137delAGAGAAAAACinsG |
| 7 | human | 80305 | TRABD | TraB domain containing | XM_006724423.3 | 86.9% | 87% | 81_218del;1128_1137delAGAGAAAAACinsG |
| 8 | human | 80305 | TRABD | TraB domain containing | XM_024452273.1 | 86.9% | 87% | 81_218del;1128_1137delAGAGAAAAACinsG |
| 9 | human | 80305 | TRABD | TraB domain containing | NM_001320484.2 | 86.8% | 86.8% | 81_218del;530_541del |
| 10 | human | 80305 | TRABD | TraB domain containing | XM_011530713.3 | 86.8% | 86.8% | 81_218del;530_541del |
| 11 | human | 80305 | TRABD | TraB domain containing | XM_011530712.2 | 86% | 86.1% | 81_218del;530_541del;1140_1149delAGAGAAAAACinsG |
| 12 | human | 80305 | TRABD | TraB domain containing | XM_011530716.2 | 86% | 86.1% | 81_218del;530_541del;1140_1149delAGAGAAAAACinsG |
| 13 | human | 80305 | TRABD | TraB domain containing | XM_011530717.2 | 86% | 86.1% | 81_218del;530_541del;1140_1149delAGAGAAAAACinsG |
| 14 | human | 80305 | TRABD | TraB domain containing | XM_011530718.2 | 86% | 86.1% | 81_218del;530_541del;1140_1149delAGAGAAAAACinsG |
| 15 | human | 80305 | TRABD | TraB domain containing | XM_017028943.1 | 86% | 86.1% | 81_218del;530_541del;1140_1149delAGAGAAAAACinsG |
| 16 | human | 80305 | TRABD | TraB domain containing | XM_024452272.1 | 86% | 86.1% | 81_218del;530_541del;1140_1149delAGAGAAAAACinsG |
| 17 | human | 80305 | TRABD | TraB domain containing | XM_011530715.2 | 83.7% | 83.8% | (many diffs) |
| 18 | human | 80305 | TRABD | TraB domain containing | XR_001755302.1 | 53% | (many diffs) | |
| 19 | human | 80305 | TRABD | TraB domain containing | NR_135275.2 | 42.7% | (many diffs) | |
| 20 | human | 80305 | TRABD | TraB domain containing | XR_938346.3 | 41.8% | (many diffs) | |
| 21 | human | 80305 | TRABD | TraB domain containing | XR_938345.2 | 41.4% | (many diffs) | |
| 22 | human | 80305 | TRABD | TraB domain containing | XR_002958713.1 | 40.8% | (many diffs) | |
| 23 | human | 80305 | TRABD | TraB domain containing | XR_001755303.2 | 40.4% | (many diffs) | |
| 24 | mouse | 67976 | Trabd | TraB domain containing | XM_006521309.3 | 83.5% | 88.5% | (many diffs) |
| 25 | mouse | 67976 | Trabd | TraB domain containing | NM_026485.2 | 75.8% | 81.4% | (many diffs) |
| 26 | mouse | 67976 | Trabd | TraB domain containing | XM_006521308.3 | 75.8% | 81.4% | (many diffs) |
| 27 | mouse | 67976 | Trabd | TraB domain containing | XM_006521307.3 | 64.7% | 69.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1056
- ORF length:
- 990
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga cggggaggag cagcagccac cgcacgaggc caacgtggaa cctgttgtgc 121 cgtcagaggc ttcagagccg gtgcccaggg tgtacgtggt ggggacagcc cacttcagcg 181 acgacagcaa gagggacgtt gtgaagacca tccgggaggt gcagcctgac gtggtggtcg 241 tggagctctg ccaatatcgt gtgtccatgc tgaagatgga cgagagcacg ctgctgcggg 301 aggcccagga gctcagcctg gagaagctgc agcaggccgt gaggcagaac gggctcatgt 361 cggggctgat gcagatgctg ctgctgaagg tgtctgcaca catcaccgag cagctgggca 421 tggccccagg tggcgagttc agggaggcct tcaaggaggc cagcaaggtg cctttctgca 481 agttccacct gggtgaccga cccatccccg tcaccttcaa gagggccatc gcagcgctct 541 ccttctggca gaaggtcagg ctggcttggg gcctgtgctt cctgtcagac cccatcagca 601 aggatgacgt ggaacgctgc aagcagaagg acctactgga gcagatgatg gccgagatga 661 ttggcgagtt cccagacctg caccgcacca tcgtctcgga gcgcgacgtc tacctaacct 721 acatgctgcg ccaggccgcg cggcgcctcg agctgcctcg ggcctctgac gccgagccca 781 ggaagtgcgt cccctccgtg gtcgtgggcg tcgtgggcat gggccacgtg cctggcatcg 841 agaagaactg gagcaccgac ctcaacatcc aggagatcat gaccgtgccc ccgccgtccg 901 tctccggcag agtgtctcgg ttggccgtga aggccgcctt cttcggcctg ctgggctaca 961 gcctgtactg gatgggccgc cgcaccgcga gcctggtcct gtcgctgccc gccgcgcagt 1021 actgcctgca gagggtgacc gaggcccggc acaagtaccc aactttcttg tacaaagtgg 1081 ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg 1141 ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta