Construct: ORF ccsbBroad304_12755

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006356.1_s304c1, BRDN0000404954
Derived from:
ccsbBroadEn_12755
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT16 (83851)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12755
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83851 SYT16 synaptotagmin 16 NM_001367650.1 59.8% 59.8% 1_408del
2 human 83851 SYT16 synaptotagmin 16 XM_024449728.1 59.8% 59.8% 1_408del
3 human 83851 SYT16 synaptotagmin 16 XM_024449729.1 59.8% 59.8% 1_408del
4 human 83851 SYT16 synaptotagmin 16 XM_024449730.1 59.8% 59.8% 1_408del
5 human 83851 SYT16 synaptotagmin 16 XM_011537229.2 47.8% 47.8% 1_663del
6 human 83851 SYT16 synaptotagmin 16 NM_001367657.1 43.9% 43.9% 1_777del
7 human 83851 SYT16 synaptotagmin 16 NM_001367654.1 43.7% 43.7% 1_783del
8 human 83851 SYT16 synaptotagmin 16 XM_011537227.2 40.1% 40.1% 1_906del
9 human 83851 SYT16 synaptotagmin 16 NM_001367659.1 38% 38% 1_990del
10 human 83851 SYT16 synaptotagmin 16 NM_001367652.1 37.9% 37.9% 1_996del
11 human 83851 SYT16 synaptotagmin 16 NM_001367656.1 31.4% 31.4% 1_1326del
12 human 83851 SYT16 synaptotagmin 16 NM_001367661.1 31.4% 31.4% 1_1326del
13 human 83851 SYT16 synaptotagmin 16 NM_001367663.1 31.4% 31.4% 1_1326del
14 human 83851 SYT16 synaptotagmin 16 XM_006720272.3 31.4% 31.4% 1_1326del
15 human 83851 SYT16 synaptotagmin 16 XM_024449720.1 31.4% 31.4% 1_1326del
16 human 83851 SYT16 synaptotagmin 16 XM_024449721.1 31.4% 31.4% 1_1326del
17 human 83851 SYT16 synaptotagmin 16 XM_024449723.1 31.4% 31.4% 1_1326del
18 human 83851 SYT16 synaptotagmin 16 XM_024449724.1 31.4% 31.4% 1_1326del
19 human 83851 SYT16 synaptotagmin 16 XM_024449725.1 19.5% 19.3% (many diffs)
20 human 83851 SYT16 synaptotagmin 16 XM_017021697.2 18.8% 18.5% (many diffs)
21 human 83851 SYT16 synaptotagmin 16 XM_024449726.1 16.4% 15.6% (many diffs)
22 human 83851 SYT16 synaptotagmin 16 XM_024449727.1 15.6% 15.3% (many diffs)
23 human 83851 SYT16 synaptotagmin 16 XR_002957566.1 14.7% 1_1755del;2054_2170del;2239_2240ins242
24 mouse 238266 Syt16 synaptotagmin XVI XM_006515841.3 34.2% 35.3% (many diffs)
25 mouse 238266 Syt16 synaptotagmin XVI NM_172804.2 33.3% 34.4% (many diffs)
26 mouse 238266 Syt16 synaptotagmin XVI XM_006515840.3 28.6% 29.5% (many diffs)
27 mouse 238266 Syt16 synaptotagmin XVI XM_006515837.3 27.9% 28.8% (many diffs)
28 mouse 238266 Syt16 synaptotagmin XVI XM_006515838.3 27.9% 28.8% (many diffs)
29 mouse 238266 Syt16 synaptotagmin XVI XM_006515839.3 27.9% 28.8% (many diffs)
30 mouse 238266 Syt16 synaptotagmin XVI XM_017315058.1 27.9% 28.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
675
ORF length:
609
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac ccgagagaga atgatgggag agaaactatt ctatctcagc cacctgcacc
121cagaagggga aatgaaagtg actctggttc tggagccaag aagtaatata agcagtggag
181ggtctccgct cagcccatct gcggtttctc acagtgatag tacttcatcc acgcagtcgc
241tgtctcatgg aggggcgcca gagctgttgg tggggctctc gtacaatgcc acaacggggc
301gattatctgt ggaaatgatc aaaggcagcc atttccgaaa cctcgctgtt aaccgagcac
361ctgatacata tggaaaactc tttctcctca attctgtggg tcaagagatg tcccgttgca
421agacgtccat tcggcgtggt cagcccaatc ctgtctataa ggagaccttt gttttccagg
481tggccctctt tcagctgtct gatgtcacgt tgatgatttc cgtttataac aggcgtacta
541tgaagcgtaa agagatgatt ggctggattg ccctgggcca gaacagcagt ggagaggagg
601aacaagatca ctgggaggag atgaaggaaa ccaaaggcca gcagatctgc agatggcaca
661ctttgctgga atcctaccca actttcttgt acaaagtggt tggtaagcct atccctaacc
721ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
781cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.