Construct: ORF ccsbBroad304_12794
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004370.1_s304c1, BRDN0000411393
- Derived from:
- ccsbBroadEn_12794
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TBC1D3F (84218)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_12794
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524185.2 | 71.4% | 62.5% | (many diffs) |
| 2 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722247.2 | 71.3% | 62.3% | (many diffs) |
| 3 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722253.2 | 71.3% | 62.3% | (many diffs) |
| 4 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721908.2 | 71.2% | 62.3% | (many diffs) |
| 5 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524174.1 | 71.1% | 61.8% | (many diffs) |
| 6 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525176.2 | 71.1% | 61.8% | (many diffs) |
| 7 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_017024010.2 | 62.7% | 62.7% | (many diffs) |
| 8 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722226.3 | 55.2% | 47.7% | 763_862del;974_1581del |
| 9 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369501.1 | 55.1% | 47.5% | 364T>A;763_862del;974_1581del |
| 10 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722252.3 | 55.1% | 47.5% | 364T>A;763_862del;974_1581del |
| 11 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721907.3 | 55% | 47.5% | (many diffs) |
| 12 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_006722056.2 | 55% | 47.2% | (many diffs) |
| 13 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722239.2 | 55% | 47.2% | (many diffs) |
| 14 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | NM_001291463.1 | 53% | 45.3% | 763_928del;1040_1647del |
| 15 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722224.3 | 53% | 45.3% | 763_928del;1040_1647del |
| 16 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001291459.2 | 52.9% | 45.2% | 364T>A;763_928del;1040_1647del |
| 17 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | NM_001291465.1 | 52.9% | 45.2% | 364T>A;763_928del;1040_1647del |
| 18 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369500.1 | 52.9% | 45.2% | 364T>A;763_928del;1040_1647del |
| 19 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | NM_001001418.6 | 52.8% | 45.2% | (many diffs) |
| 20 | human | 729873 | TBC1D3 | TBC1 domain family member 3 | NM_001123391.3 | 52.8% | 45.2% | (many diffs) |
| 21 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | NM_001123392.3 | 52.8% | 44.8% | (many diffs) |
| 22 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | NM_001291464.1 | 52.8% | 44.8% | (many diffs) |
| 23 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_006722055.2 | 52.8% | 44.8% | (many diffs) |
| 24 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722237.2 | 52.8% | 44.8% | (many diffs) |
| 25 | human | 84218 | TBC1D3F | TBC1 domain family member 3F | NM_032258.5 | 52.7% | 45% | (many diffs) |
| 26 | human | 102723859 | TBC1D3E | TBC1 domain family member 3E | NM_001291466.1 | 52.7% | 44.8% | (many diffs) |
| 27 | human | 102723859 | TBC1D3E | TBC1 domain family member 3E | XM_006722254.2 | 52.7% | 44.8% | (many diffs) |
| 28 | human | 101060321 | TBC1D3G | TBC1 domain family member 3G | NM_001291462.2 | 52.7% | 44.6% | (many diffs) |
| 29 | human | 414059 | TBC1D3B | TBC1 domain family member 3B | NM_001001417.6 | 52.6% | 44.5% | (many diffs) |
| 30 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_017030257.1 | 52.6% | 44.5% | (many diffs) |
| 31 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524184.2 | 50.3% | 44.4% | (many diffs) |
| 32 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722244.2 | 50.3% | 44.2% | (many diffs) |
| 33 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722250.2 | 50.3% | 44.2% | (many diffs) |
| 34 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_017024646.1 | 50.2% | 44.2% | (many diffs) |
| 35 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524173.1 | 50.2% | 43.9% | (many diffs) |
| 36 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525175.2 | 50.2% | 43.9% | (many diffs) |
| 37 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011547459.2 | 50% | 43.5% | (many diffs) |
| 38 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_011524183.2 | 49.4% | 42.7% | 159_341del;946_1045del;1157_1764del |
| 39 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_006722243.2 | 49.4% | 42.5% | (many diffs) |
| 40 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722249.2 | 49.4% | 42.5% | (many diffs) |
| 41 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721905.2 | 49.3% | 42.5% | (many diffs) |
| 42 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_011524172.1 | 49.3% | 42.2% | (many diffs) |
| 43 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525174.2 | 49.3% | 42.2% | (many diffs) |
| 44 | human | 102724862 | TBC1D3I | TBC1 domain family member 3I | XM_006722223.3 | 47.7% | 40.8% | 159_341del;946_1111del;1223_1830del |
| 45 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | NM_001369499.1 | 47.6% | 40.6% | (many diffs) |
| 46 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_006722248.2 | 47.6% | 40.6% | (many diffs) |
| 47 | human | 101060376 | TBC1D3L | TBC1 domain family member 3L | XM_011524175.2 | 47.6% | 40.6% | (many diffs) |
| 48 | human | 101060389 | TBC1D3D | TBC1 domain family member 3D | XM_011524176.2 | 47.6% | 40.6% | (many diffs) |
| 49 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_006721904.2 | 47.5% | 40.6% | (many diffs) |
| 50 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_011524814.2 | 47.5% | 40.6% | (many diffs) |
| 51 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722235.2 | 47.5% | 40.3% | (many diffs) |
| 52 | human | 101060351 | TBC1D3K | TBC1 domain family member 3K | XM_006722236.1 | 47.5% | 40.3% | (many diffs) |
| 53 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525172.2 | 47.5% | 40.3% | (many diffs) |
| 54 | human | 729877 | TBC1D3H | TBC1 domain family member 3H | XM_011525173.2 | 47.5% | 40.3% | (many diffs) |
| 55 | human | 101060321 | TBC1D3G | TBC1 domain family member 3G | XM_005276914.3 | 47.4% | 40.2% | (many diffs) |
| 56 | human | 414059 | TBC1D3B | TBC1 domain family member 3B | XM_005257980.4 | 47.3% | 40% | (many diffs) |
| 57 | human | 414060 | TBC1D3C | TBC1 domain family member 3C | XM_005257981.3 | 47.3% | 40% | (many diffs) |
| 58 | human | 100510707 | TBC1D3J | TBC1 domain family member 3J | XM_024450524.1 | 45.4% | 31.8% | (many diffs) |
| 59 | human | 100510707 | TBC1D3J | TBC1 domain family member 3J | NM_001355571.1 | 39.5% | 28.9% | (many diffs) |
| 60 | human | 440452 | TBC1D3P2 | TBC1 domain family member 3... | NR_027486.1 | 36.6% | (many diffs) | |
| 61 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524059.2 | 32.1% | 26% | (many diffs) |
| 62 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524058.2 | 24.5% | 19.9% | (many diffs) |
| 63 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524057.2 | 18.2% | 14.6% | (many diffs) |
| 64 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | NM_001304284.2 | 18% | 14.6% | (many diffs) |
| 65 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | NM_004505.4 | 18% | 14.6% | (many diffs) |
| 66 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524050.1 | 18% | 14.6% | (many diffs) |
| 67 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524051.2 | 18% | 14.6% | (many diffs) |
| 68 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524052.2 | 18% | 14.6% | (many diffs) |
| 69 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524053.2 | 18% | 14.6% | (many diffs) |
| 70 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524054.2 | 18% | 14.6% | (many diffs) |
| 71 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524055.2 | 18% | 14.6% | (many diffs) |
| 72 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_011524056.2 | 18% | 14.6% | (many diffs) |
| 73 | human | 9098 | USP6 | ubiquitin specific peptidase 6 | XM_017025290.1 | 18% | 14.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 939
- ORF length:
- 873
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga cgtggtagag gtcgcgggca gttggtgggc acaagagcga gaggacatca 121 ttatgaaata cgaaaaggga caccgagctg ggctgccaga ggacaagggg cctaagcctt 181 ttcgaagcta caacaacaac gtcgatcatt tggggattgt acatgagacg gagctgcctc 241 ctctgactgc gcgggaggcg aagcaaattc ggcgggagat cagccgaaag agcaagtggg 301 tggatatgct gggagactgg gagaaataca aaagcagcag aaagctcata gatcgagcgt 361 acaagggaat gcccatgaac atccggggcc cgatgtggtc agtcctcctg aacactgagg 421 aaatgaagat gaaaaacccc ggaagatacc agatcatgaa ggagaagggc aagaggtcat 481 ctgagcacat ccagcgcatc gaccgggacg taagcgggac attaaggaag catatattct 541 tcagggatcg atacggaacc aagcagcggg aactactcca catcctcctg gcatatgagg 601 agtataaccc ggaggtgggc tactgcaggg acctgagcca catcgccgcc ttgttcctcc 661 tctatcttcc tgaggaggat gcattctggg cactggtgca gctgctggcc agtgagaggc 721 actccctgca gggatttcac agcccaaatg gcgggaccgt ccaggggctc caagaccaac 781 aggagcatgt ggtagccacg tcacaaccca agaccatggg gcatcagagc gcctcacgaa 841 gacgtccagg tgtggcccgt gggcacgttt ttgcaaccgg ttcgttgata cctgggccag 901 ggatgaggac actgtgctca agcatcttag ggcctctatg cccaactttc ttgtacaaag 961 tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta 1021 gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta