Construct: ORF ccsbBroadEn_12794

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004370.1_s300c1, BRDN0000397836
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D3F (84218)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 102724862 TBC1D3I TBC1 domain family member 3I XM_011524185.2 71.4% 62.5% (many diffs)
2 human 101060376 TBC1D3L TBC1 domain family member 3L XM_006722247.2 71.3% 62.3% (many diffs)
3 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722253.2 71.3% 62.3% (many diffs)
4 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721908.2 71.2% 62.3% (many diffs)
5 human 101060351 TBC1D3K TBC1 domain family member 3K XM_011524174.1 71.1% 61.8% (many diffs)
6 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525176.2 71.1% 61.8% (many diffs)
7 human 101060389 TBC1D3D TBC1 domain family member 3D XM_017024010.2 62.7% 62.7% (many diffs)
8 human 102724862 TBC1D3I TBC1 domain family member 3I XM_006722226.3 55.2% 47.7% 763_862del;974_1581del
9 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001369501.1 55.1% 47.5% 364T>A;763_862del;974_1581del
10 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722252.3 55.1% 47.5% 364T>A;763_862del;974_1581del
11 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721907.3 55% 47.5% (many diffs)
12 human 729877 TBC1D3H TBC1 domain family member 3H XM_006722056.2 55% 47.2% (many diffs)
13 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722239.2 55% 47.2% (many diffs)
14 human 102724862 TBC1D3I TBC1 domain family member 3I NM_001291463.1 53% 45.3% 763_928del;1040_1647del
15 human 102724862 TBC1D3I TBC1 domain family member 3I XM_006722224.3 53% 45.3% 763_928del;1040_1647del
16 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001291459.2 52.9% 45.2% 364T>A;763_928del;1040_1647del
17 human 101060389 TBC1D3D TBC1 domain family member 3D NM_001291465.1 52.9% 45.2% 364T>A;763_928del;1040_1647del
18 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001369500.1 52.9% 45.2% 364T>A;763_928del;1040_1647del
19 human 414060 TBC1D3C TBC1 domain family member 3C NM_001001418.6 52.8% 45.2% (many diffs)
20 human 729873 TBC1D3 TBC1 domain family member 3 NM_001123391.3 52.8% 45.2% (many diffs)
21 human 729877 TBC1D3H TBC1 domain family member 3H NM_001123392.3 52.8% 44.8% (many diffs)
22 human 101060351 TBC1D3K TBC1 domain family member 3K NM_001291464.1 52.8% 44.8% (many diffs)
23 human 729877 TBC1D3H TBC1 domain family member 3H XM_006722055.2 52.8% 44.8% (many diffs)
24 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722237.2 52.8% 44.8% (many diffs)
25 human 84218 TBC1D3F TBC1 domain family member 3F NM_032258.5 52.7% 45% (many diffs)
26 human 102723859 TBC1D3E TBC1 domain family member 3E NM_001291466.1 52.7% 44.8% (many diffs)
27 human 102723859 TBC1D3E TBC1 domain family member 3E XM_006722254.2 52.7% 44.8% (many diffs)
28 human 101060321 TBC1D3G TBC1 domain family member 3G NM_001291462.2 52.7% 44.6% (many diffs)
29 human 414059 TBC1D3B TBC1 domain family member 3B NM_001001417.6 52.6% 44.5% (many diffs)
30 human 414060 TBC1D3C TBC1 domain family member 3C XM_017030257.1 52.6% 44.5% (many diffs)
31 human 102724862 TBC1D3I TBC1 domain family member 3I XM_011524184.2 50.3% 44.4% (many diffs)
32 human 101060376 TBC1D3L TBC1 domain family member 3L XM_006722244.2 50.3% 44.2% (many diffs)
33 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722250.2 50.3% 44.2% (many diffs)
34 human 414060 TBC1D3C TBC1 domain family member 3C XM_017024646.1 50.2% 44.2% (many diffs)
35 human 101060351 TBC1D3K TBC1 domain family member 3K XM_011524173.1 50.2% 43.9% (many diffs)
36 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525175.2 50.2% 43.9% (many diffs)
37 human 414060 TBC1D3C TBC1 domain family member 3C XM_011547459.2 50% 43.5% (many diffs)
38 human 102724862 TBC1D3I TBC1 domain family member 3I XM_011524183.2 49.4% 42.7% 159_341del;946_1045del;1157_1764del
39 human 101060376 TBC1D3L TBC1 domain family member 3L XM_006722243.2 49.4% 42.5% (many diffs)
40 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722249.2 49.4% 42.5% (many diffs)
41 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721905.2 49.3% 42.5% (many diffs)
42 human 101060351 TBC1D3K TBC1 domain family member 3K XM_011524172.1 49.3% 42.2% (many diffs)
43 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525174.2 49.3% 42.2% (many diffs)
44 human 102724862 TBC1D3I TBC1 domain family member 3I XM_006722223.3 47.7% 40.8% 159_341del;946_1111del;1223_1830del
45 human 101060376 TBC1D3L TBC1 domain family member 3L NM_001369499.1 47.6% 40.6% (many diffs)
46 human 101060389 TBC1D3D TBC1 domain family member 3D XM_006722248.2 47.6% 40.6% (many diffs)
47 human 101060376 TBC1D3L TBC1 domain family member 3L XM_011524175.2 47.6% 40.6% (many diffs)
48 human 101060389 TBC1D3D TBC1 domain family member 3D XM_011524176.2 47.6% 40.6% (many diffs)
49 human 414060 TBC1D3C TBC1 domain family member 3C XM_006721904.2 47.5% 40.6% (many diffs)
50 human 414060 TBC1D3C TBC1 domain family member 3C XM_011524814.2 47.5% 40.6% (many diffs)
51 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722235.2 47.5% 40.3% (many diffs)
52 human 101060351 TBC1D3K TBC1 domain family member 3K XM_006722236.1 47.5% 40.3% (many diffs)
53 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525172.2 47.5% 40.3% (many diffs)
54 human 729877 TBC1D3H TBC1 domain family member 3H XM_011525173.2 47.5% 40.3% (many diffs)
55 human 101060321 TBC1D3G TBC1 domain family member 3G XM_005276914.3 47.4% 40.2% (many diffs)
56 human 414059 TBC1D3B TBC1 domain family member 3B XM_005257980.4 47.3% 40% (many diffs)
57 human 414060 TBC1D3C TBC1 domain family member 3C XM_005257981.3 47.3% 40% (many diffs)
58 human 100510707 TBC1D3J TBC1 domain family member 3J XM_024450524.1 45.4% 31.8% (many diffs)
59 human 100510707 TBC1D3J TBC1 domain family member 3J NM_001355571.1 39.5% 28.9% (many diffs)
60 human 440452 TBC1D3P2 TBC1 domain family member 3... NR_027486.1 36.6% (many diffs)
61 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524059.2 32.1% 26% (many diffs)
62 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524058.2 24.5% 19.9% (many diffs)
63 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524057.2 18.2% 14.6% (many diffs)
64 human 9098 USP6 ubiquitin specific peptidase 6 NM_001304284.2 18% 14.6% (many diffs)
65 human 9098 USP6 ubiquitin specific peptidase 6 NM_004505.4 18% 14.6% (many diffs)
66 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524050.1 18% 14.6% (many diffs)
67 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524051.2 18% 14.6% (many diffs)
68 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524052.2 18% 14.6% (many diffs)
69 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524053.2 18% 14.6% (many diffs)
70 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524054.2 18% 14.6% (many diffs)
71 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524055.2 18% 14.6% (many diffs)
72 human 9098 USP6 ubiquitin specific peptidase 6 XM_011524056.2 18% 14.6% (many diffs)
73 human 9098 USP6 ubiquitin specific peptidase 6 XM_017025290.1 18% 14.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
939
ORF length:
873
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CGTGGTAGAG GTCGCGGGCA GTTGGTGGGC ACAAGAGCGA GAGGACATCA
121TTATGAAATA CGAAAAGGGA CACCGAGCTG GGCTGCCAGA GGACAAGGGG CCTAAGCCTT
181TTCGAAGCTA CAACAACAAC GTCGATCATT TGGGGATTGT ACATGAGACG GAGCTGCCTC
241CTCTGACTGC GCGGGAGGCG AAGCAAATTC GGCGGGAGAT CAGCCGAAAG AGCAAGTGGG
301TGGATATGCT GGGAGACTGG GAGAAATACA AAAGCAGCAG AAAGCTCATA GATCGAGCGT
361ACAAGGGAAT GCCCATGAAC ATCCGGGGCC CGATGTGGTC AGTCCTCCTG AACACTGAGG
421AAATGAAGAT GAAAAACCCC GGAAGATACC AGATCATGAA GGAGAAGGGC AAGAGGTCAT
481CTGAGCACAT CCAGCGCATC GACCGGGACG TAAGCGGGAC ATTAAGGAAG CATATATTCT
541TCAGGGATCG ATACGGAACC AAGCAGCGGG AACTACTCCA CATCCTCCTG GCATATGAGG
601AGTATAACCC GGAGGTGGGC TACTGCAGGG ACCTGAGCCA CATCGCCGCC TTGTTCCTCC
661TCTATCTTCC TGAGGAGGAT GCATTCTGGG CACTGGTGCA GCTGCTGGCC AGTGAGAGGC
721ACTCCCTGCA GGGATTTCAC AGCCCAAATG GCGGGACCGT CCAGGGGCTC CAAGACCAAC
781AGGAGCATGT GGTAGCCACG TCACAACCCA AGACCATGGG GCATCAGAGC GCCTCACGAA
841GACGTCCAGG TGTGGCCCGT GGGCACGTTT TTGCAACCGG TTCGTTGATA CCTGGGCCAG
901GGATGAGGAC ACTGTGCTCA AGCATCTTAG GGCCTCTATG CCCAACTTTC TTGTACAAAG
961Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)