Construct: ORF ccsbBroad304_13743

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003382.1_s304c1, BRDN0000461419
Derived from:
ccsbBroadEn_13743
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NPIPB6 (728741)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13743
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 100507607 NPIPB9 nuclear pore complex intera... NM_001287250.1 94.7% 94.2% (many diffs)
2 human 100507607 NPIPB9 nuclear pore complex intera... XM_003118719.8 94.7% 94.2% (many diffs)
3 human 728734 NPIPB8 nuclear pore complex intera... NM_001310136.1 94.5% 94% (many diffs)
4 human 728734 NPIPB8 nuclear pore complex intera... XM_017023624.1 94.5% 94% (many diffs)
5 human 728734 NPIPB8 nuclear pore complex intera... XM_024450415.1 94.5% 94% (many diffs)
6 human 728741 NPIPB6 nuclear pore complex intera... NM_001282524.1 93.1% 92.7% (many diffs)
7 human 728741 NPIPB6 nuclear pore complex intera... XM_011545929.2 93.1% 92.7% (many diffs)
8 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022825.2 89.4% 87.4% (many diffs)
9 human 728734 NPIPB8 nuclear pore complex intera... XM_017023626.1 89.4% 87.2% (many diffs)
10 human 728734 NPIPB8 nuclear pore complex intera... XM_024450416.1 89.4% 87.2% (many diffs)
11 human 100507607 NPIPB9 nuclear pore complex intera... XM_011545693.3 89% 88.6% (many diffs)
12 human 100507607 NPIPB9 nuclear pore complex intera... NM_001287251.1 88.9% 83.4% (many diffs)
13 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022824.2 88.9% 83.4% (many diffs)
14 human 728734 NPIPB8 nuclear pore complex intera... XM_017023625.1 88.8% 83.2% (many diffs)
15 human 728741 NPIPB6 nuclear pore complex intera... XM_005255741.4 87.8% 85.7% (many diffs)
16 human 728741 NPIPB6 nuclear pore complex intera... XM_017023630.1 87.8% 85.7% (many diffs)
17 human 728741 NPIPB6 nuclear pore complex intera... XM_024450419.1 87.8% 85.7% (many diffs)
18 human 728741 NPIPB6 nuclear pore complex intera... XM_017023628.1 87.3% 81.7% (many diffs)
19 human 728734 NPIPB8 nuclear pore complex intera... XM_024450417.1 86.9% 86.1% (many diffs)
20 human 440348 NPIPB15 nuclear pore complex intera... XM_011523496.2 86.5% 79.8% (many diffs)
21 human 440348 NPIPB15 nuclear pore complex intera... NM_001306094.1 86% 82.9% (many diffs)
22 human 440348 NPIPB15 nuclear pore complex intera... XM_011523498.3 86% 82.9% (many diffs)
23 human 440348 NPIPB15 nuclear pore complex intera... XM_017023248.1 86% 82.9% (many diffs)
24 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022817.2 85.5% 85.1% (many diffs)
25 human 728741 NPIPB6 nuclear pore complex intera... XM_011545931.2 85.4% 84.6% (many diffs)
26 human 728734 NPIPB8 nuclear pore complex intera... XM_017023622.1 85.3% 84.9% (many diffs)
27 human 100507607 NPIPB9 nuclear pore complex intera... XM_011545690.3 84.8% 84.4% (many diffs)
28 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022818.2 81.3% 76.1% (many diffs)
29 human 728734 NPIPB8 nuclear pore complex intera... XM_017023623.1 81.2% 80.7% (many diffs)
30 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022814.2 80.8% 80.4% (many diffs)
31 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022815.2 80.8% 80.4% (many diffs)
32 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022820.2 80.8% 78.9% (many diffs)
33 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022821.2 80.8% 78.9% (many diffs)
34 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022822.2 80.8% 78.9% (many diffs)
35 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022819.2 80.4% 75.6% (many diffs)
36 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022823.2 78.5% 77.9% (many diffs)
37 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022816.2 76.9% 76.5% (many diffs)
38 human 728734 NPIPB8 nuclear pore complex intera... XM_024450418.1 75.9% 73% (many diffs)
39 human 728741 NPIPB6 nuclear pore complex intera... XM_017023631.2 74.3% 71.3% (many diffs)
40 human 440348 NPIPB15 nuclear pore complex intera... XM_024450290.1 73.4% 69.8% (many diffs)
41 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022826.2 68.5% 66% (many diffs)
42 human 100288332 NPIPA5 nuclear pore complex intera... XM_024450132.1 58.8% 51.4% (many diffs)
43 human 642778 NPIPA3 nuclear pore complex intera... XM_017023554.1 58.6% 51.3% (many diffs)
44 human 642778 NPIPA3 nuclear pore complex intera... XM_024450379.1 58.6% 51.3% (many diffs)
45 human 642799 NPIPA2 nuclear pore complex intera... XM_024450385.1 58.5% 51.1% (many diffs)
46 human 642799 NPIPA2 nuclear pore complex intera... XM_024450386.1 58.5% 51.1% (many diffs)
47 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022833.2 57.1% 45.2% (many diffs)
48 human 101059938 NPIPA7 nuclear pore complex intera... XM_011522339.3 57% 47.2% (many diffs)
49 human 101059938 NPIPA7 nuclear pore complex intera... XM_005255735.5 57% 45.3% (many diffs)
50 human 102724993 LOC102724993 nuclear pore complex-intera... XM_017030211.2 56.9% 45.7% (many diffs)
51 human 728741 NPIPB6 nuclear pore complex intera... XM_005255742.4 55.6% 53.8% (many diffs)
52 human 642778 NPIPA3 nuclear pore complex intera... XM_011522576.2 55.4% 48.4% (many diffs)
53 human 642778 NPIPA3 nuclear pore complex intera... XM_011522577.2 55.4% 48.4% (many diffs)
54 human 642778 NPIPA3 nuclear pore complex intera... XM_017023553.1 55.4% 48.4% (many diffs)
55 human 101059938 NPIPA7 nuclear pore complex intera... NM_001282507.1 55.3% 45.1% (many diffs)
56 human 101059953 NPIPA8 nuclear pore complex intera... NM_001282511.2 55.3% 45.1% (many diffs)
57 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022834.1 55.3% 45.1% (many diffs)
58 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022835.1 55.3% 45.1% (many diffs)
59 human 642799 NPIPA2 nuclear pore complex intera... XM_024450381.1 55.3% 48.2% (many diffs)
60 human 642799 NPIPA2 nuclear pore complex intera... XM_024450382.1 55.3% 48.2% (many diffs)
61 human 642799 NPIPA2 nuclear pore complex intera... XM_024450383.1 55.3% 48.2% (many diffs)
62 human 102724993 LOC102724993 nuclear pore complex-intera... XM_024452519.1 55.1% 45.5% (many diffs)
63 human 642778 NPIPA3 nuclear pore complex intera... XM_011522578.2 54.6% 43.7% (many diffs)
64 human 642799 NPIPA2 nuclear pore complex intera... XM_024450384.1 54.5% 43.5% (many diffs)
65 human 642778 NPIPA3 nuclear pore complex intera... XM_011522580.2 54.4% 45.4% (many diffs)
66 human 642799 NPIPA2 nuclear pore complex intera... XM_024450388.1 54.4% 45.2% (many diffs)
67 human 728741 NPIPB6 nuclear pore complex intera... XM_005255743.3 54.2% 50.6% (many diffs)
68 human 729978 NPIPB2 nuclear pore complex intera... XM_024450424.1 53.9% 52.9% (many diffs)
69 human 729978 NPIPB2 nuclear pore complex intera... XM_024450425.1 53.9% 52.9% (many diffs)
70 human 729978 NPIPB2 nuclear pore complex intera... XM_024450426.1 53.9% 52.9% (many diffs)
71 human 100288332 NPIPA5 nuclear pore complex intera... NM_001277325.2 52.8% 43.4% (many diffs)
72 human 642778 NPIPA3 nuclear pore complex intera... NM_001277323.1 52.6% 43.4% (many diffs)
73 human 642799 NPIPA2 nuclear pore complex intera... NM_001277324.1 52.6% 43.2% (many diffs)
74 human 9284 NPIPA1 nuclear pore complex intera... NM_006985.4 52.3% 43.4% (many diffs)
75 human 642799 NPIPA2 nuclear pore complex intera... XM_024450387.1 51.7% 43% (many diffs)
76 human 100507607 NPIPB9 nuclear pore complex intera... XM_017022827.2 50.4% 47.3% (many diffs)
77 human 440348 NPIPB15 nuclear pore complex intera... XM_011523501.2 49.2% 48.4% (many diffs)
78 human 728888 NPIPB11 nuclear pore complex intera... XM_024450421.1 47% 40.9% (many diffs)
79 human 729978 NPIPB2 nuclear pore complex intera... NM_001355514.1 44.9% 41.2% (many diffs)
80 human 729978 NPIPB2 nuclear pore complex intera... XM_024450428.1 44.9% 41.2% (many diffs)
81 human 729978 NPIPB2 nuclear pore complex intera... XM_024450431.1 44.9% 41.2% (many diffs)
82 human 729978 NPIPB2 nuclear pore complex intera... XM_024450429.1 39.8% 36.6% (many diffs)
83 human 440353 NPIPB12 nuclear pore complex intera... NM_001355401.1 38.1% 32.2% (many diffs)
84 human 440345 NPIPB4 nuclear pore complex intera... XM_024450289.1 37.7% 32% (many diffs)
85 human 102724993 LOC102724993 nuclear pore complex-intera... XR_001756353.1 37.4% (many diffs)
86 human 100288332 NPIPA5 nuclear pore complex intera... XM_011522336.3 37% 29.7% (many diffs)
87 human 642799 NPIPA2 nuclear pore complex intera... XM_006720917.4 37% 29.5% (many diffs)
88 human 642778 NPIPA3 nuclear pore complex intera... XM_011522581.1 37% 29.5% (many diffs)
89 human 642778 NPIPA3 nuclear pore complex intera... XM_011522583.3 37% 29.5% (many diffs)
90 human 642799 NPIPA2 nuclear pore complex intera... XM_011522593.1 37% 29.5% (many diffs)
91 human 642799 NPIPA2 nuclear pore complex intera... XM_011522594.3 37% 29.5% (many diffs)
92 human 642778 NPIPA3 nuclear pore complex intera... XM_011522584.2 36.1% 29.2% (many diffs)
93 human 642799 NPIPA2 nuclear pore complex intera... XM_011522595.2 36.1% 29.2% (many diffs)
94 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022836.2 35.8% 31% (many diffs)
95 human 101059938 NPIPA7 nuclear pore complex intera... XM_017022840.2 35.8% 31% (many diffs)
96 human 102724993 LOC102724993 nuclear pore complex-intera... XM_017030214.2 35.7% 31.4% (many diffs)
97 human 729978 NPIPB2 nuclear pore complex intera... XM_024450430.1 35% 28% (many diffs)
98 human 102724993 LOC102724993 nuclear pore complex-intera... XM_024452522.1 33.5% 24% (many diffs)
99 human 100288332 NPIPA5 nuclear pore complex intera... NM_001351200.1 33.4% 24% (many diffs)
100 human 642778 NPIPA3 nuclear pore complex intera... XM_005255485.4 33.4% 23.8% (many diffs)
101 human 642799 NPIPA2 nuclear pore complex intera... XM_005255492.4 33.4% 23.8% (many diffs)
102 human 100288332 NPIPA5 nuclear pore complex intera... XR_002957772.1 33.4% (many diffs)
103 human 23117 NPIPB3 nuclear pore complex intera... NM_130464.3 31.9% 26.4% (many diffs)
104 human 100132247 NPIPB5 nuclear pore complex intera... NM_001135865.1 31.5% 26.4% (many diffs)
105 human 613037 NPIPB13 nuclear pore complex intera... NM_001321892.1 31.3% 25.7% (many diffs)
106 human 728888 NPIPB11 nuclear pore complex intera... NM_001310137.2 31.1% 26.5% (many diffs)
107 human 440345 NPIPB4 nuclear pore complex intera... XM_017023247.1 31.1% 26.1% (many diffs)
108 human 440345 NPIPB4 nuclear pore complex intera... XM_024450285.1 31% 26.1% (many diffs)
109 human 728888 NPIPB11 nuclear pore complex intera... XM_024450420.1 30.3% 25.9% (many diffs)
110 human 440345 NPIPB4 nuclear pore complex intera... NM_001310148.1 29.1% 24.4% (many diffs)
111 human 440345 NPIPB4 nuclear pore complex intera... XM_017023244.2 29.1% 24.4% (many diffs)
112 human 440345 NPIPB4 nuclear pore complex intera... XM_024450283.1 28.4% 23.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1434
ORF length:
1365
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gatgagccgc tgtctcattc tgcaaatggt gaagctctct attgtcctga
121ccccacagtt cctgtcgcat gaccagagcc agctcaccaa ggagctgcag cagcatgtaa
181agtcagtgac atgcccatgc gagtacctga ggaaggttat caatagtctg gctgtctatc
241gtcatcgtga gactgacttt ggtgtaggag ttcgagacca ccctggccaa catggcaaaa
301ccccatctcc acaaaaattg gataatttga taattatcat tattgggttt ctgagacgtt
361acacatttaa cattctcttc tgcacaagtt gcctttgtgt gtctttcctg aagactatct
421tctggtctcg aaatggacat gatggatcca tggatgtaca gcagagagcc tggaggtcca
481accacagtag acagaaaggg ctgaggtcca tttgtatgca cacaaagaaa agagtttctt
541cctttcgagg aaataaaatt ggcctgaaag acgtcattac tctacggagg catgtggaaa
601caaaagttag agctaaaatc cgtaagagga aggtgacaac gaaaatcaac cgtcatgaca
661aaatcaatgg aaagaggaag accgccagaa aacagaaaat gtttcaacgt gcgcaagagt
721tgcggcggcg ggcagaggac taccacaaat gcaaaatccc cccttctgca agaaagcctc
781tttgcaactg ggtcagaatg gtggcagcgg agcatcgtca ttcttcagga ttgccctact
841ggctctacct cacagctgaa actttaaaaa acaggatggg ccgccagcca cctcctccaa
901ctcaacaaca ttctataact gataactccc tgagcctcaa gacacctcct gagtgtctgc
961tcactcccct tccaccctca gtggatgata atatcaagga gtgtcctctt gctcctcttc
1021caccctctcc tcttccaccc tcagtggatg ataatctgaa ggaatgtctc tttgtcccgc
1081ttccaccctc tcctcttcca ccctcagtgg atgataatct gaaggaatgt ctctttgtcc
1141cgcttccacc ctctcctctt ccaccctcag tggatgataa tctcaagact cctcccttag
1201ctactcagga ggccgaggtg gaaaaaccac ccaaacccaa gaggtggagg gtggatgagg
1261tggaacaatc accgaaaccc aagaggcgga gggtggatga ggtggaacaa tcgcccaagc
1321ccaagaggca gagggaggcc gaggcacaac aattacccaa acccaagagg cggaggttga
1381gtaagctgag aacacgccat tgcactcaag cctgggcaat aagaataaat ccgttgccaa
1441ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta
1501cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)