Construct: ORF ccsbBroad304_13944

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011593.1_s304c1, BRDN0000408571
Derived from:
ccsbBroadEn_13944
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RORA (6095)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13944
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6095 RORA RAR related orphan receptor A NM_134262.3 99.8% 99.5% 1263C>A;1394delA
2 human 6095 RORA RAR related orphan receptor A XM_011521877.3 98.6% 97.8% (many diffs)
3 human 6095 RORA RAR related orphan receptor A XM_017022466.2 98% 97.6% (many diffs)
4 human 6095 RORA RAR related orphan receptor A XM_005254584.5 97.4% 96% (many diffs)
5 human 6095 RORA RAR related orphan receptor A XM_011521875.2 92.3% 90.2% (many diffs)
6 human 6095 RORA RAR related orphan receptor A NM_134261.3 88% 86.9% (many diffs)
7 human 6095 RORA RAR related orphan receptor A XM_011521874.1 87% 87% (many diffs)
8 human 6095 RORA RAR related orphan receptor A NM_002943.3 84.8% 83.5% (many diffs)
9 human 6095 RORA RAR related orphan receptor A NM_134260.2 82.7% 81.6% (many diffs)
10 human 6095 RORA RAR related orphan receptor A XM_011521878.2 82.3% 82% 0_1ins246;1017C>A;1148delA
11 human 6095 RORA RAR related orphan receptor A XM_017022467.2 82.3% 82% 0_1ins246;1017C>A;1148delA
12 human 6095 RORA RAR related orphan receptor A XM_011521879.3 80.1% 79.9% 0_1ins276;987C>A;1118delA
13 mouse 19883 Rora RAR-related orphan receptor... NM_001289916.1 91.3% 98.9% (many diffs)
14 mouse 19883 Rora RAR-related orphan receptor... XM_006510880.1 89.6% 97% (many diffs)
15 mouse 19883 Rora RAR-related orphan receptor... XM_006510878.2 88.5% 95.7% (many diffs)
16 mouse 19883 Rora RAR-related orphan receptor... XM_006510877.3 81.9% 87.5% (many diffs)
17 mouse 19883 Rora RAR-related orphan receptor... NM_013646.2 80.7% 86.6% (many diffs)
18 mouse 19883 Rora RAR-related orphan receptor... XM_017313219.1 74.8% 81.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1473
ORF length:
1404
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gatgtatttt gtgatcgcag cgatgaaagc tcaaattgaa attattccat
121gcaagatctg tggagacaaa tcatcaggaa tccattatgg tgtcattaca tgtgaaggct
181gcaagggctt tttcaggaga agtcagcaaa gcaatgccac ctactcctgt cctcgtcaga
241agaactgttt gattgatcga accagtagaa accgctgcca acactgtcga ttacagaaat
301gccttgccgt agggatgtct cgagatgctg taaaatttgg ccgaatgtca aaaaagcaga
361gagacagctt gtatgcagaa gtacagaaac accggatgca gcagcagcag cgcgaccacc
421agcagcagcc tggagaggct gagccgctga cgcccaccta caacatctcg gccaacgggc
481tgacggaact tcacgacgac ctcagtaact acattgacgg gcacacccct gaggggagta
541aggcagactc cgccgtcagc agcttctacc tggacataca gccttcccca gaccagtcag
601gtcttgatat caatggaatc aaaccagaac caatatgtga ctacacacca gcatcaggct
661tctttcccta ctgttcgttc accaacggcg agacttcccc aactgtgtcc atggcagaat
721tagaacacct tgcacagaat atatctaaat cgcatctgga aacctgccaa tacttgagag
781aagagctcca gcagataacg tggcagacct ttttacagga agaaattgag aactatcaaa
841acaagcagcg ggaggtgatg tggcaattgt gtgccatcaa aattacagaa gctatacagt
901atgtggtgga gtttgccaaa cgcattgatg gatttatgga actgtgtcaa aatgatcaaa
961ttgtgcttct aaaagcaggt tctctagagg tggtgtttat cagaatgtgc cgtgcctttg
1021actctcagaa caacaccgtg tactttgatg ggaagtatgc cagccccgac gtcttcaaat
1081ccttaggttg tgaagacttt attagctttg tgtttgaatt tggaaagagt ttatgttcta
1141tgcacctgac tgaagatgaa attgcattat tttctgcatt tgtactgatg tcagcagatc
1201gctcatggct gcaagaaaag gtaaaaattg aaaaactgca acagaaaatt cagctagctc
1261ttcaacacgt cctacagaag aatcaccgag aagatggaat actaacaaag ttaatatgca
1321aggtgtctac attaagagcc ttatgtggac gacatacaga aaagctaatg gcatttaaag
1381caatataccc agacattgtg cgacttcatt ttcctccatt atacaaggag ttgttcactt
1441cagaatttga gccagcaatg caattgatgg gttgccaact ttcttgtaca aagtggttgg
1501taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag ctagcgctaa
1561ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)

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