Construct: ORF ccsbBroadEn_13944
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011593.1_s300c1, BRDN0000394687
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RORA (6095)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6095 | RORA | RAR related orphan receptor A | NM_134262.3 | 99.8% | 99.5% | 1263C>A;1394delA |
| 2 | human | 6095 | RORA | RAR related orphan receptor A | XM_011521877.3 | 98.6% | 97.8% | (many diffs) |
| 3 | human | 6095 | RORA | RAR related orphan receptor A | XM_017022466.2 | 98% | 97.6% | (many diffs) |
| 4 | human | 6095 | RORA | RAR related orphan receptor A | XM_005254584.5 | 97.4% | 96% | (many diffs) |
| 5 | human | 6095 | RORA | RAR related orphan receptor A | XM_011521875.2 | 92.3% | 90.2% | (many diffs) |
| 6 | human | 6095 | RORA | RAR related orphan receptor A | NM_134261.3 | 88% | 86.9% | (many diffs) |
| 7 | human | 6095 | RORA | RAR related orphan receptor A | XM_011521874.1 | 87% | 87% | (many diffs) |
| 8 | human | 6095 | RORA | RAR related orphan receptor A | NM_002943.3 | 84.8% | 83.5% | (many diffs) |
| 9 | human | 6095 | RORA | RAR related orphan receptor A | NM_134260.2 | 82.7% | 81.6% | (many diffs) |
| 10 | human | 6095 | RORA | RAR related orphan receptor A | XM_011521878.2 | 82.3% | 82% | 0_1ins246;1017C>A;1148delA |
| 11 | human | 6095 | RORA | RAR related orphan receptor A | XM_017022467.2 | 82.3% | 82% | 0_1ins246;1017C>A;1148delA |
| 12 | human | 6095 | RORA | RAR related orphan receptor A | XM_011521879.3 | 80.1% | 79.9% | 0_1ins276;987C>A;1118delA |
| 13 | mouse | 19883 | Rora | RAR-related orphan receptor... | NM_001289916.1 | 91.3% | 98.9% | (many diffs) |
| 14 | mouse | 19883 | Rora | RAR-related orphan receptor... | XM_006510880.1 | 89.6% | 97% | (many diffs) |
| 15 | mouse | 19883 | Rora | RAR-related orphan receptor... | XM_006510878.2 | 88.5% | 95.7% | (many diffs) |
| 16 | mouse | 19883 | Rora | RAR-related orphan receptor... | XM_006510877.3 | 81.9% | 87.5% | (many diffs) |
| 17 | mouse | 19883 | Rora | RAR-related orphan receptor... | NM_013646.2 | 80.7% | 86.6% | (many diffs) |
| 18 | mouse | 19883 | Rora | RAR-related orphan receptor... | XM_017313219.1 | 74.8% | 81.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1473
- ORF length:
- 1404
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATGTATTTT GTGATCGCAG CGATGAAAGC TCAAATTGAA ATTATTCCAT 121 GCAAGATCTG TGGAGACAAA TCATCAGGAA TCCATTATGG TGTCATTACA TGTGAAGGCT 181 GCAAGGGCTT TTTCAGGAGA AGTCAGCAAA GCAATGCCAC CTACTCCTGT CCTCGTCAGA 241 AGAACTGTTT GATTGATCGA ACCAGTAGAA ACCGCTGCCA ACACTGTCGA TTACAGAAAT 301 GCCTTGCCGT AGGGATGTCT CGAGATGCTG TAAAATTTGG CCGAATGTCA AAAAAGCAGA 361 GAGACAGCTT GTATGCAGAA GTACAGAAAC ACCGGATGCA GCAGCAGCAG CGCGACCACC 421 AGCAGCAGCC TGGAGAGGCT GAGCCGCTGA CGCCCACCTA CAACATCTCG GCCAACGGGC 481 TGACGGAACT TCACGACGAC CTCAGTAACT ACATTGACGG GCACACCCCT GAGGGGAGTA 541 AGGCAGACTC CGCCGTCAGC AGCTTCTACC TGGACATACA GCCTTCCCCA GACCAGTCAG 601 GTCTTGATAT CAATGGAATC AAACCAGAAC CAATATGTGA CTACACACCA GCATCAGGCT 661 TCTTTCCCTA CTGTTCGTTC ACCAACGGCG AGACTTCCCC AACTGTGTCC ATGGCAGAAT 721 TAGAACACCT TGCACAGAAT ATATCTAAAT CGCATCTGGA AACCTGCCAA TACTTGAGAG 781 AAGAGCTCCA GCAGATAACG TGGCAGACCT TTTTACAGGA AGAAATTGAG AACTATCAAA 841 ACAAGCAGCG GGAGGTGATG TGGCAATTGT GTGCCATCAA AATTACAGAA GCTATACAGT 901 ATGTGGTGGA GTTTGCCAAA CGCATTGATG GATTTATGGA ACTGTGTCAA AATGATCAAA 961 TTGTGCTTCT AAAAGCAGGT TCTCTAGAGG TGGTGTTTAT CAGAATGTGC CGTGCCTTTG 1021 ACTCTCAGAA CAACACCGTG TACTTTGATG GGAAGTATGC CAGCCCCGAC GTCTTCAAAT 1081 CCTTAGGTTG TGAAGACTTT ATTAGCTTTG TGTTTGAATT TGGAAAGAGT TTATGTTCTA 1141 TGCACCTGAC TGAAGATGAA ATTGCATTAT TTTCTGCATT TGTACTGATG TCAGCAGATC 1201 GCTCATGGCT GCAAGAAAAG GTAAAAATTG AAAAACTGCA ACAGAAAATT CAGCTAGCTC 1261 TTCAACACGT CCTACAGAAG AATCACCGAG AAGATGGAAT ACTAACAAAG TTAATATGCA 1321 AGGTGTCTAC ATTAAGAGCC TTATGTGGAC GACATACAGA AAAGCTAATG GCATTTAAAG 1381 CAATATACCC AGACATTGTG CGACTTCATT TTCCTCCATT ATACAAGGAG TTGTTCACTT 1441 CAGAATTTGA GCCAGCAATG CAATTGATGG GTTGCCAACT TTCTTGTACA AAGTtggcat 1501 tataagaaag cattgcttat caatttgttg caacgaac