Construct: ORF ccsbBroad304_14276

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014640.1_s304c1, BRDN0000461552
Derived from:
ccsbBroadEn_14276
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
PDZD7 (79955)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14276
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79955 PDZD7 PDZ domain containing 7 NM_024895.4 98.6% 98.4% 1341_1343delGAA;1532_1534delTTTinsCAA;1537_1551del
2 human 79955 PDZD7 PDZ domain containing 7 XM_017016668.2 96.3% 83.6% (many diffs)
3 human 79955 PDZD7 PDZ domain containing 7 XM_011540183.3 95.4% 83.3% (many diffs)
4 human 79955 PDZD7 PDZ domain containing 7 NM_001351044.1 94.6% 82.4% (many diffs)
5 human 79955 PDZD7 PDZ domain containing 7 XM_011540181.3 93.5% 93.1% (many diffs)
6 human 79955 PDZD7 PDZ domain containing 7 XM_005270165.3 90.8% 90.1% (many diffs)
7 human 79955 PDZD7 PDZ domain containing 7 XM_017016667.2 89% 88.3% (many diffs)
8 human 79955 PDZD7 PDZ domain containing 7 XR_945816.3 77.5% (many diffs)
9 human 79955 PDZD7 PDZ domain containing 7 XM_011540179.3 75.1% 74.8% (many diffs)
10 human 79955 PDZD7 PDZ domain containing 7 NM_001195263.2 49.2% 49% (many diffs)
11 human 79955 PDZD7 PDZ domain containing 7 XM_011540177.3 49.2% 49% (many diffs)
12 human 79955 PDZD7 PDZ domain containing 7 XM_011540178.3 49.2% 49% (many diffs)
13 human 79955 PDZD7 PDZ domain containing 7 XR_001747203.2 47.6% (many diffs)
14 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_017318033.1 80.6% 79% (many diffs)
15 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_017318034.1 80.1% 78.8% (many diffs)
16 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526542.1 78.9% 84.2% (many diffs)
17 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526545.3 75.5% 80.4% (many diffs)
18 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526540.3 74.6% 79.5% (many diffs)
19 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526541.3 66.8% 74.5% (many diffs)
20 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526539.3 65.1% 69.1% (many diffs)
21 mouse 100503041 Pdzd7 PDZ domain containing 7 XR_386435.2 60.7% (many diffs)
22 mouse 100503041 Pdzd7 PDZ domain containing 7 NM_001195265.1 43.2% 45.8% (many diffs)
23 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526536.1 43.2% 45.8% (many diffs)
24 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526537.3 43.2% 45.8% (many diffs)
25 mouse 100503041 Pdzd7 PDZ domain containing 7 XM_006526538.1 39.3% 42.3% (many diffs)
26 mouse 100503041 Pdzd7 PDZ domain containing 7 XR_877655.1 37.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1599
ORF length:
1533
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gcagggtttc gcagtgggct tcgacccact gggcctagga gacctgagct
121ccggctctct gagctccctc tcctcccgag gccacctagg cagcgactca ggctccaccg
181caacgcgata cctgctaagg aagcaacaac ggctgctgaa cgggcccccc cgcggaatcc
241gagcctcatc gcccatggga cgcgtcatcc tcatcaactc ccccatcgaa gccaacagtg
301atgaaagtga catcatccat tcagtccggg tggagaagag tccagcaggg aggctgggct
361tcagcgtgcg cgggggctca gagcatggcc tgggcatctt cgtcagcaaa gtggaggaag
421gcagcagtgc agagcgggct ggcctgtgcg tgggggacaa gatcacggag gtgaatgggc
481tgagcctgga gagcaccacc atgggtagcg ccgtaaaggt gctgaccagc agcagccgcc
541tgcacatgat ggttcggcgc atgggccgtg tgccgggcat caagttctcc aaggagaaga
601ccacgtgggt ggatgtggtg aatcggcgcc tggtagtgga gaagtgcggt tcaacaccct
661ccgacaccag ctcagaagat ggtgtccggc gcatcgtcca cctatacaca acctccgacg
721acttctgcct gggcttcaac atccgtgggg gcaaggagtt tggcctgggc atctatgtgt
781ccaaagtgga ccatggtggg ctggccgagg agaatggcat caaggtgggg gaccaggtcc
841tggcagccaa cggtgtcagg tttgacgaca tcagccacag ccaggccgtg gaggtgctga
901agggccaaac gcacatcatg ctgaccatca aggagaccgg ccggtatcct gcctacaagg
961agatggtttc tgagtactgc tggctggacc gactgagcaa cggggtgctg cagcagctgt
1021ccccggcctc tgagagcagc tccagcgtct cttcgtgcgc ctccagcgcc ccctacagct
1081cgggctccct gccgtcggac cgcatggaca tctgcctcgg gcaggaggag cccggcagcc
1141gcggcccagg ctgggggcgg gcggacacag ccatgcagac ggagcccgat gcgggaggcc
1201gggtggagac ctggtgcagc gtgcggccca cagtcatcct cagggacacc gccatccgct
1261cggacggccc ccatcccggc cgccgccttg actctgcgct ctctgagtct cccaagacgg
1321ctttgctgct ggccctcagc cgaccccggc cccccatcac gcgctcccag agctatctga
1381ccttgtggga ggagaagcag cagcggaagg agaagtcggg gtcccctggg gagaagggtg
1441ccctgcagcg ctccaagacg ctgatgaacc tcttcttcaa gggagggcgg caggggaggc
1501tagcgcggga cgggcgcaga gaggcctgga cactggacag cgggagcctg gccaaaactt
1561accctcgcct ggacatagag aaagagatgg gggcaacata accaactttc ttgtacaaag
1621tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
1681gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)

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