Construct: ORF ccsbBroad304_14571
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018861.1_s304c1, BRDN0000459345
- Derived from:
- ccsbBroadEn_14571
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDK11A (728642)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14571
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033486.3 | 37.6% | .6% | 11delA;506_1967del;2173_2174insG |
| 2 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002925.2 | 37.1% | .6% | (many diffs) |
| 3 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001787.3 | 37% | .6% | 11delA;506_2006del;2212_2213insG |
| 4 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_024011.4 | 36.9% | .6% | (many diffs) |
| 5 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542490.3 | 36.5% | .6% | (many diffs) |
| 6 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542491.2 | 36.5% | .6% | (many diffs) |
| 7 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542492.2 | 36.5% | .6% | (many diffs) |
| 8 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001291345.2 | 36.3% | .6% | (many diffs) |
| 9 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002926.2 | 35.9% | .6% | (many diffs) |
| 10 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_006711065.4 | 35.7% | .6% | (many diffs) |
| 11 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_033529.4 | 35.7% | .6% | (many diffs) |
| 12 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542493.3 | 35.3% | .6% | (many diffs) |
| 13 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313982.2 | 35.3% | .6% | (many diffs) |
| 14 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313896.2 | 35.1% | .6% | (many diffs) |
| 15 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033489.3 | 33.1% | .5% | (many diffs) |
| 16 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002928.2 | 32.5% | .5% | (many diffs) |
| 17 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542494.3 | 32.2% | .5% | (many diffs) |
| 18 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002927.2 | 32.2% | .5% | (many diffs) |
| 19 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451174.1 | 32.2% | .5% | (many diffs) |
| 20 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542495.3 | 30.9% | .5% | (many diffs) |
| 21 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958172.1 | 30.6% | (many diffs) | |
| 22 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132739.2 | 30.1% | (many diffs) | |
| 23 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132740.2 | 29.7% | (many diffs) | |
| 24 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958174.1 | 29.5% | (many diffs) | |
| 25 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958173.1 | 25% | (many diffs) | |
| 26 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958171.1 | 24.4% | (many diffs) | |
| 27 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538508.2 | 33.8% | .6% | (many diffs) |
| 28 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319929.1 | 33.8% | .6% | (many diffs) |
| 29 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_007661.3 | 33.7% | .6% | (many diffs) |
| 30 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_011250179.2 | 33.7% | .6% | (many diffs) |
| 31 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XR_001784084.1 | 31.5% | (many diffs) | |
| 32 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319931.1 | 29.2% | .6% | (many diffs) |
| 33 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_001347308.1 | 29.2% | .6% | (many diffs) |
| 34 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538511.2 | 29.2% | .6% | (many diffs) |
| 35 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319930.1 | 29.2% | .6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 96
- ORF length:
- 27
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gggtgatgaa aggactcttg gaaagtgaaa actttagatg aaattcttca 121 ggaaaagaaa cgaaggaagg aacaagagga gaaagcagag ataaaacgct taaaaaattc 181 tgatgaccgg gattccaagc gggattccct tgaggagggg gagctgagag atcaccgcat 241 ggagatcaca ataaggaact ccccgtatag aagagaagac tctatggaag acagaggaga 301 agaagatgat tctttggcca tcaaaccacc ccagcaaatg tctcggaaag aaaaagctca 361 tcacagaaaa gatgaaaaga gaaaagagaa acgtaggcat cgtagccatt cagcagaagg 421 ggggaagcat gctagagtga aagaaaaaga aagagagcac gaacgtcgga aacggcatcg 481 agaagaacag gataaagctc gccgggaatg ggaaagacag aagagaaggg agatggcaag 541 ggagcattcc aggagagaaa gggaccgctt ggagcagtca agaagatgac cttcagcgag 601 cacccctaca acaacctccg caagcgcttc ggggctctgc tctcagacca gggcttcgac 661 ctcatgaaca agttcctgac ctacttcccc gggaggagga tcagcgctga ggacggcctc 721 aagcatgagt atttccgcga gacccccctc cccatcgacc cctccatgtt ccccacgtgg 781 gcccgccaag agcgagcagc agcgtgtgaa gcggggcacc agcccgaggc cccctgaggg 841 aggcctgggc tacagccagc tgggtgacga cgacctgaag gagacgggct tccaccttac 901 caccacgaac cagggggcct ctgccgcggg ccccggcttc agcctcaagt tcttgccaac 961 tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc tcgattctac 1021 gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc tctggatta