Construct: ORF ccsbBroadEn_14571
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018861.1_s300c1, BRDN0000458157
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDK11A (728642)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033486.3 | 37.6% | .6% | 11delA;506_1967del;2173_2174insG |
| 2 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002925.2 | 37.1% | .6% | (many diffs) |
| 3 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001787.3 | 37% | .6% | 11delA;506_2006del;2212_2213insG |
| 4 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_024011.4 | 36.9% | .6% | (many diffs) |
| 5 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542490.3 | 36.5% | .6% | (many diffs) |
| 6 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542491.2 | 36.5% | .6% | (many diffs) |
| 7 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542492.2 | 36.5% | .6% | (many diffs) |
| 8 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001291345.2 | 36.3% | .6% | (many diffs) |
| 9 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002926.2 | 35.9% | .6% | (many diffs) |
| 10 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_006711065.4 | 35.7% | .6% | (many diffs) |
| 11 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_033529.4 | 35.7% | .6% | (many diffs) |
| 12 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542493.3 | 35.3% | .6% | (many diffs) |
| 13 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313982.2 | 35.3% | .6% | (many diffs) |
| 14 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313896.2 | 35.1% | .6% | (many diffs) |
| 15 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033489.3 | 33.1% | .5% | (many diffs) |
| 16 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002928.2 | 32.5% | .5% | (many diffs) |
| 17 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542494.3 | 32.2% | .5% | (many diffs) |
| 18 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002927.2 | 32.2% | .5% | (many diffs) |
| 19 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451174.1 | 32.2% | .5% | (many diffs) |
| 20 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542495.3 | 30.9% | .5% | (many diffs) |
| 21 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958172.1 | 30.6% | (many diffs) | |
| 22 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132739.2 | 30.1% | (many diffs) | |
| 23 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132740.2 | 29.7% | (many diffs) | |
| 24 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958174.1 | 29.5% | (many diffs) | |
| 25 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958173.1 | 25% | (many diffs) | |
| 26 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958171.1 | 24.4% | (many diffs) | |
| 27 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538508.2 | 33.8% | .6% | (many diffs) |
| 28 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319929.1 | 33.8% | .6% | (many diffs) |
| 29 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_007661.3 | 33.7% | .6% | (many diffs) |
| 30 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_011250179.2 | 33.7% | .6% | (many diffs) |
| 31 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XR_001784084.1 | 31.5% | (many diffs) | |
| 32 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319931.1 | 29.2% | .6% | (many diffs) |
| 33 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_001347308.1 | 29.2% | .6% | (many diffs) |
| 34 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538511.2 | 29.2% | .6% | (many diffs) |
| 35 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319930.1 | 29.2% | .6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 125
- ORF length:
- 27
- Sequence:
-
1 AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GGTGATGAAA GGACTCTTGG 121 AAAGTGAAAA CTTTAGATGA AATTCTTCAG GAAAAGAAAC GAAGGAAGGA ACAAGAGGAG 181 AAAGCAGAGA TAAAACGCTT AAAAAATTCT GATGACCGGG ATTCCAAGCG GGATTCCCTT 241 GAGGAGGGGG AGCTGAGAGA TCACCGCATG GAGATCACAA TAAGGAACTC CCCGTATAGA 301 AGAGAAGACT CTATGGAAGA CAGAGGAGAA GAAGATGATT CTTTGGCCAT CAAACCACCC 361 CAGCAAATGT CTCGGAAAGA AAAAGCTCAT CACAGAAAAG ATGAAAAGAG AAAAGAGAAA 421 CGTAGGCATC GTAGCCATTC AGCAGAAGGG GGGAAGCATG CTAGAGTGAA AGAAAAAGAA 481 AGAGAGCACG AACGTCGGAA ACGGCATCGA GAAGAACAGG ATAAAGCTCG CCGGGAATGG 541 GAAAGACAGA AGAGAAGGGA GATGGCAAGG GAGCATTCCA GGAGAGAAAG GGACCGCTTG 601 GAGCAGTCAA GAAGATGACC TTCAGCGAGC ACCCCTACAA CAACCTCCGC AAGCGCTTCG 661 GGGCTCTGCT CTCAGACCAG GGCTTCGACC TCATGAACAA GTTCCTGACC TACTTCCCCG 721 GGAGGAGGAT CAGCGCTGAG GACGGCCTCA AGCATGAGTA TTTCCGCGAG ACCCCCCTCC 781 CCATCGACCC CTCCATGTTC CCCACGTGGG CCCGCCAAGA GCGAGCAGCA GCGTGTGAAG 841 CGGGGCACCA GCCCGAGGCC CCCTGAGGGA GGCCTGGGCT ACAGCCAGCT GGGTGACGAC 901 GACCTGAAGG AGACGGGCTT CCACCTTACC ACCACGAACC AGGGGGCCTC TGCCGCGGGC 961 CCCGGCTTCA GCCTCAAGTT CTTGCCAACT TTCTTGTACA AAGTTGGCAT TATAAGAAAG 1021 CATTGCTTAT CAATTTGTTG CAACGAACAG GTCACTATCA GTCAAAATAA AATCATTATT 1081 GCCATCCAGC GATCAAGGA