Construct: ORF ccsbBroad304_15082
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018841.1_s304c1, BRDN0000459325
- Derived from:
- ccsbBroadEn_15082
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SNRK (54861)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15082
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54861 | SNRK | SNF related kinase | NM_001100594.1 | 93.5% | 33.7% | (many diffs) |
| 2 | human | 54861 | SNRK | SNF related kinase | NM_017719.5 | 93.5% | 33.7% | (many diffs) |
| 3 | human | 54861 | SNRK | SNF related kinase | XM_005265245.3 | 93.5% | 33.7% | (many diffs) |
| 4 | human | 54861 | SNRK | SNF related kinase | NM_001330750.1 | 66.9% | 6.7% | (many diffs) |
| 5 | mouse | 20623 | Snrk | SNF related kinase | NM_001164572.1 | 77.8% | 33.8% | (many diffs) |
| 6 | mouse | 20623 | Snrk | SNF related kinase | NM_133741.2 | 77.8% | 33.8% | (many diffs) |
| 7 | mouse | 20623 | Snrk | SNF related kinase | XM_006511998.3 | 77.8% | 33.8% | (many diffs) |
| 8 | mouse | 20623 | Snrk | SNF related kinase | XM_006511999.3 | 77.8% | 33.8% | (many diffs) |
| 9 | mouse | 20623 | Snrk | SNF related kinase | XM_006512000.3 | 77.8% | 33.8% | (many diffs) |
| 10 | mouse | 20623 | Snrk | SNF related kinase | XM_006512002.3 | 77.8% | 33.8% | (many diffs) |
| 11 | mouse | 20623 | Snrk | SNF related kinase | XM_006512003.3 | 77.8% | 33.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 849
- ORF length:
- 780
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcaggattt aagcgagggt atgatggaaa gattgctgga ttatatgatc 121 tggataaaac cttgggtcga ggccattttg ccgtggttaa acttgccagg catgtcttta 181 cgggtgaaaa ggtggcagta aaagttattg acaagacaaa actggacact ctagctactg 241 gtcatctttt ccaggaagtg agatgcatga aactagtgca gcatcctaac atcgtccgcc 301 tttatgaagt tattgacacc cagaccaaac tatatcttat tctagaactt ggggatggag 361 gagatatgtt tgattatata atgaaacatg aggagggtct taatgaagac ttggccaaga 421 agtattttgc tcagatagtt catgctatat cttattgcca taaactccat gtggttcaca 481 gagacttaaa accagagaat gtagtcttct ttgaaaaaca aggtcttgta aagttgacag 541 actttgggtt cagcaacaaa tttcaaccag ggaagaagct cactacaagc tgtggatctc 601 ttgcatattc cgctccagaa attctgcttg gtgatgagta tgatgcacct gcagtagata 661 tttggagtct gggagtgatc cttttcatgt tggtgtgtgg gcagccgccc tttcaagaag 721 ccaatgacag tgaaacactg acaatgatca tggattgcaa atatacagta ccatcccatg 781 tgtctaaaga gtgtaaagac ctaatcacac ggatgctaca gagagatccc aagagaaggg 841 ctttctttta gaagagattg aaaatcatcc ttggcttcag ggagtggacc cttcaccagc 901 tacaaagtat aacattcccc ttgtgtcata caaaaatctc tcggaagagg agcacaacag 961 catcattcag cgcatggtgc ttggggacat agcggatcga gacgccattg tagaagccct 1021 ggaaaccaac aggtataacc atatcacagc cacatacttc ctgctggctg aaaggatcct 1081 gagagaaaag caagagaaag aaatacagac cagatctgca agcccgagca atatcaaggc 1141 ccagtttagg cagtcatggc caaccaaaat tgatgtaccc caggaccttg aggatgacct 1201 cacggccact cctttgtccc acgcgactgt ccctcagtct cctgctcggg ctgctgacag 1261 tgtcctcaat ggccacagga gcaaaggcct gtgtgactca gctaagaaag atgacctccc 1321 tgagttggct ggaccagcac tctctacggt gccacccgca agcttaaaac ccacagccag 1381 tgggcggaag tgtctgttca gggtggaaga agatgaagag gaagatgagg aggacaagaa 1441 acccatgtcc ctctcaacac aagtggtttt gcgccggaag ccatctgtaa ccaaccgcct 1501 gacatccagg aagagtgcgc ccgtcctcaa ccagatcttt gaggaagggg aatctgatga 1561 tgagtttgac atggatgaga atctgcctcc caagttgagc aggttaaaga tgaatacagc 1621 atctcaagca catgcttcct actgcttcca ccgatcgaga aagcaaagca agagatcgag 1681 ctgcagtcga tatctgcaca gccgatgctg aatctgagag cagttgaggc agtcatagag 1741 atccagaatt gacgtactcc caggcacttg aggatgagct cacaggcact ccttggtagc 1801 acgcgagatg tccgtcagtc tcgcaagcca agcaatgaca gtggagtcaa ggacaacacc 1861 agcaccagcg agagcgactc aggtgagaac ggtcactcca gcgagtcggg tggcaacgcc 1921 atcaatacat cgggtaccac aagccgctgt gccggcccca gcaagtccat gcatctggcc 1981 tctcgcagtg atggggaggt ggatgagagc gtcaaactca tgagcatgtg cctcggctcc 2041 caggttcatg ggagcaccaa gtacattatt gatccacaga atggcttgtc attttgcagt 2101 gtgatagtcc aagagatatt taaggagaaa aaatgcatta gctccacagg gaatgcaggg 2161 catgtccctg cagtgggggg cataaagttt ttgtatgacc acatggcaga taccaccact 2221 gaattggaac ggataaagag caagaacctg aaaaataacg tgctgcagct acctctgtgc 2281 gaaaagacca tctctgtgaa catccagcgg aaccctaagg aggggctgct gtgcgcatcc 2341 agcccagcca gctgttgcca tgtcatcttg ccaactttct tgtacaaagt ggttggtaag 2401 cctatcccta accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg 2461 tggcgcgtta agtcgacaat caacctctgg atta