Construct: ORF ccsbBroadEn_15082
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018841.1_s300c1, BRDN0000458137
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SNRK (54861)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 54861 | SNRK | SNF related kinase | NM_001100594.1 | 93.5% | 33.7% | (many diffs) |
| 2 | human | 54861 | SNRK | SNF related kinase | NM_017719.5 | 93.5% | 33.7% | (many diffs) |
| 3 | human | 54861 | SNRK | SNF related kinase | XM_005265245.3 | 93.5% | 33.7% | (many diffs) |
| 4 | human | 54861 | SNRK | SNF related kinase | NM_001330750.1 | 66.9% | 6.7% | (many diffs) |
| 5 | mouse | 20623 | Snrk | SNF related kinase | NM_001164572.1 | 77.8% | 33.8% | (many diffs) |
| 6 | mouse | 20623 | Snrk | SNF related kinase | NM_133741.2 | 77.8% | 33.8% | (many diffs) |
| 7 | mouse | 20623 | Snrk | SNF related kinase | XM_006511998.3 | 77.8% | 33.8% | (many diffs) |
| 8 | mouse | 20623 | Snrk | SNF related kinase | XM_006511999.3 | 77.8% | 33.8% | (many diffs) |
| 9 | mouse | 20623 | Snrk | SNF related kinase | XM_006512000.3 | 77.8% | 33.8% | (many diffs) |
| 10 | mouse | 20623 | Snrk | SNF related kinase | XM_006512002.3 | 77.8% | 33.8% | (many diffs) |
| 11 | mouse | 20623 | Snrk | SNF related kinase | XM_006512003.3 | 77.8% | 33.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 99
- ORF end:
- 879
- ORF length:
- 780
- Sequence:
-
1 AATGGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT 61 TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT GGCAGGATTT AAGCGAGGGT 121 ATGATGGAAA GATTGCTGGA TTATATGATC TGGATAAAAC CTTGGGTCGA GGCCATTTTG 181 CCGTGGTTAA ACTTGCCAGG CATGTCTTTA CGGGTGAAAA GGTGGCAGTA AAAGTTATTG 241 ACAAGACAAA ACTGGACACT CTAGCTACTG GTCATCTTTT CCAGGAAGTG AGATGCATGA 301 AACTAGTGCA GCATCCTAAC ATCGTCCGCC TTTATGAAGT TATTGACACC CAGACCAAAC 361 TATATCTTAT TCTAGAACTT GGGGATGGAG GAGATATGTT TGATTATATA ATGAAACATG 421 AGGAGGGTCT TAATGAAGAC TTGGCCAAGA AGTATTTTGC TCAGATAGTT CATGCTATAT 481 CTTATTGCCA TAAACTCCAT GTGGTTCACA GAGACTTAAA ACCAGAGAAT GTAGTCTTCT 541 TTGAAAAACA AGGTCTTGTA AAGTTGACAG ACTTTGGGTT CAGCAACAAA TTTCAACCAG 601 GGAAGAAGCT CACTACAAGC TGTGGATCTC TTGCATATTC CGCTCCAGAA ATTCTGCTTG 661 GTGATGAGTA TGATGCACCT GCAGTAGATA TTTGGAGTCT GGGAGTGATC CTTTTCATGT 721 TGGTGTGTGG GCAGCCGCCC TTTCAAGAAG CCAATGACAG TGAAACACTG ACAATGATCA 781 TGGATTGCAA ATATACAGTA CCATCCCATG TGTCTAAAGA GTGTAAAGAC CTAATCACAC 841 GGATGCTACA GAGAGATCCC AAGAGAAGGG CTTTCTTTTA Gaagagattg aaaatcatcc 901 ttggcttcag ggagtggacc cttcaccagc tacaaagtat aacattcccc ttgtgtcata 961 caaaaatctc tcggaagagg agcacaacag catcattcag cgcatggtgc ttggggacat 1021 agcggatcga gacgccattg tagaagccct ggaaaccaac aggtataacc atatcacagc 1081 cacatacttc ctgctggctg aaaggatcct gagagaaaag caagagaaag aaatacagac 1141 cagatctgca agcccgagca atatcaaggc ccagtttagg cagtcatggc caaccaaaat 1201 tgatgtaccc caggaccttg aggatgacct cacggccact cctttgtccc acgcgactgt 1261 ccctcagtct cctgctcggg ctgctgacag tgtcctcaat ggccacagga gcaaaggcct 1321 gtgtgactca gctaagaaag atgacctccc tgagttggct ggaccagcac tctctacggt 1381 gccacccgca agcttaaaac ccacagccag tgggcggaag tgtctgttca gggtggaaga 1441 agatgaagag gaagatgagg aggacaagaa acccatgtcc ctctcaacac aagtggtttt 1501 gcgccggaag ccatctgtaa ccaaccgcct gacatccagg aagagtgcgc ccgtcctcaa 1561 ccagatcttt gaggaagggg aatctgatga tgagtttgac atggatgaga atctgcctcc 1621 caagttgagc aggttaaaga tgaATACAGC ATCTCAAGCA CATGCTTCCT ACTGCTTCCA 1681 CCGATCGAGA AAGCAAAGCA AGAGATCGAG CTGCAGTCGA TATCTGCACA GCCGATGCTG 1741 AATCTGAGAG CAGTTGAGGC AGTCATAGAG ATCCAGAATT GACGTACTCC CAGGCACTTG 1801 AGGATGAGCT CACAGGCACT CCTTGGTAGC ACGCGAGATG TCCGTCAGTC TCGCAAGCCA 1861 AGCAATGACA GTGGAGTCAA GGACAACACC AGCACCAGCG AGAGCGACTC AGGTGAGAAC 1921 GGTCACTCCA GCGAGTCGGG TGGCAACGCC ATCAATACAT CGGGTACCAC AAGCCGCTGT 1981 GCCGGCCCCA GCAAGTCCAT GCATCTGGCC TCTCGCAGTG ATGGGGAGGT GGATGAGAGC 2041 GTCAAACTCA TGAGCATGTG CCTCGGCTCC CAGGTTCATG GGAGCACCAA GTACATTATT 2101 GATCCACAGA ATGGCTTGTC ATTTTGCAGT GTGATAGTCC AAGAGATATT TAAGGAGAAA 2161 AAATGCATTA GCTCCACAGG GAATGCAGGG CATGTCCCTG CAGTGGGGGG CATAAAGTTT 2221 TTGTATGACC ACATGGCAGA TACCACCACT GAATTGGAAC GGATAAAGAG CAAGAACCTG 2281 AAAAATAACG TGCTGCAGCT ACCTCTGTGC GAAAAGACCA TCTCTGTGAA CATCCAGCGG 2341 AACCCTAAGG AGGGGCTGCT GTGCGCATCC AGCCCAGCCA GCTGTTGCCA TGTCATCTTG 2401 CCAACTTTCT TGTACAAAGT TGGCATTATA AGAAAGCATT GCTTATCAAT TTGTTGCAAC 2461 GAACAGGTCA CTATCAGTCA AAATAAAATC ATTATTGCCA TCCAGCTGAT C