Construct: ORF ccsbBroad304_15989

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004246.1_s304c1, BRDN0000410159
Derived from:
ccsbBroadEn_15989
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLIP4 (79745)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15989
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79745 CLIP4 CAP-Gly domain containing l... XM_011533110.1 81.8% 82% 195A>G;1211_1212insAGTTCT;1476_1794delinsG
2 human 79745 CLIP4 CAP-Gly domain containing l... NM_001287528.1 81.8% 81.8% 1_321del;516A>G;1532_1533insAGTTCT
3 human 79745 CLIP4 CAP-Gly domain containing l... XM_017004959.2 80.5% 80.6% (many diffs)
4 human 79745 CLIP4 CAP-Gly domain containing l... XM_006712105.4 78.4% 78% (many diffs)
5 human 79745 CLIP4 CAP-Gly domain containing l... NM_001287527.2 69.4% 69.5% (many diffs)
6 human 79745 CLIP4 CAP-Gly domain containing l... NM_024692.6 69.4% 69.5% (many diffs)
7 human 79745 CLIP4 CAP-Gly domain containing l... XM_005264562.2 69.4% 69.5% (many diffs)
8 human 79745 CLIP4 CAP-Gly domain containing l... XM_005264563.1 69.4% 69.5% (many diffs)
9 human 79745 CLIP4 CAP-Gly domain containing l... XM_006712104.2 69.4% 69.5% (many diffs)
10 human 79745 CLIP4 CAP-Gly domain containing l... XM_011533109.1 69.4% 69.5% (many diffs)
11 human 79745 CLIP4 CAP-Gly domain containing l... XM_017004958.1 69.4% 69.5% (many diffs)
12 human 79745 CLIP4 CAP-Gly domain containing l... NR_109844.1 63% (many diffs)
13 human 79745 CLIP4 CAP-Gly domain containing l... XR_939718.3 34.5% (many diffs)
14 human 79745 CLIP4 CAP-Gly domain containing l... XR_939717.3 30% (many diffs)
15 human 79745 CLIP4 CAP-Gly domain containing l... XR_001738944.2 29.6% (many diffs)
16 human 79745 CLIP4 CAP-Gly domain containing l... XR_002959339.1 27.4% (many diffs)
17 human 79745 CLIP4 CAP-Gly domain containing l... XR_939719.3 22.4% (many diffs)
18 mouse 78785 Clip4 CAP-GLY domain containing l... NM_001271484.1 66.7% 70.5% (many diffs)
19 mouse 78785 Clip4 CAP-GLY domain containing l... NM_175378.1 61.2% 64.8% (many diffs)
20 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525154.2 61.2% 64.8% (many diffs)
21 mouse 78785 Clip4 CAP-GLY domain containing l... NM_001271483.1 57.6% 60.8% (many diffs)
22 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525147.3 57.6% 60.8% (many diffs)
23 mouse 78785 Clip4 CAP-GLY domain containing l... NM_030179.3 56.8% 59.9% (many diffs)
24 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525143.3 56.8% 59.9% (many diffs)
25 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525144.2 56.8% 59.9% (many diffs)
26 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525145.3 56.8% 59.9% (many diffs)
27 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525146.1 56.8% 59.9% (many diffs)
28 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525148.3 52% 55.1% (many diffs)
29 mouse 78785 Clip4 CAP-GLY domain containing l... XM_006525149.2 52% 55.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1548
ORF length:
1482
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgac tcttttacat tatacctgca aatctggagc tcatggtatt ggtgatgtgg
121aaacagctgt aaaatttgca actcagctta ttgacctggg agcagacatt agtttgcgga
181gtcgctggac aaacatgaat gctttgcatt atgctgctta ttttgatgtc cctgaactta
241taagagtgat tttgaaaacg tcgaaaccaa aagatgtgga tgccacttgc agtgatttta
301attttggaac agctttgcat attgcagcat acaacttgtg tgcaggtgct gtgaagtgcc
361tcttggagca gggagcaaat cctgcattta ggaatgacaa aggacagatc cctgctgatg
421ttgttccaga cccagtagat atgccgttag agatggctga cgccgcagcc actgctaagg
481aaatcaagca gatgcttcta gatgcggtgc ctctgtcatg taacatctca aaggccatgc
541tcccaaatta tgatcatgtc actggcaagg caatgcttac gtcacttggc ctgaagttgg
601gggatcgtgt tgttattgca ggacagaagg ttggtacatt aagattttgt ggaacaactg
661aatttgcaag tgggcagtgg gctggcattg aactggatga accagaagga aaaaataatg
721gaagtgttgg aaaagtccag tactttaaat gtgcccccaa gtatggtatt tttgcacctc
781tttcaaagat aagtaaagca aaaggtcgaa ggaagaatat aacacacact ccttctacaa
841aagctgctgt acctctcatc aggtcccaga aaattgacgt agctcatgtg acgtcaaaag
901taaatactgg attaatgaca tcaaaaaaag atagtgcttc tgagtcaaca ctttcattgc
961ctcctggtga agaacttaaa actgtgacag agaaagatgt tgccctgctt ggatctgtca
1021gcagctgctc ctctacatct tctttggaac acagacagag ctaccccaag aaacagaatg
1081caatcagcag taacaagaag acaatgagca aaagcccttc cctttcatcc agagccagtg
1141ctggtttgaa ttcctcagca acatctacag caaataatag ccgttgcgag ggggaactcc
1201gcctcggaga gagagtgtta gtggtaggac agagactggg caccattagg ttctttggga
1261caacaaactt cgctccagtt ctaggatatt ggtatggtat agagcttgaa aaaccccatg
1321gcaagaatga tggttcagtt ggaggtgtgc agtattttag ctgttctcca agatatggaa
1381tatttgctcc cccatccagg gtgcaaagag taacagattc cctggatacc ctttcagaaa
1441tttcttcaaa taaacagaac cattcttatc ctggttttag gagaagtttt agcacaactt
1501ctgcttcttc ccaaaaggag attaacagaa gaaatgcttt ttccaagtnn ccaactttct
1561tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
1621aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)