Construct: ORF ccsbBroadEn_00693

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000715.1_s300c1, BRDN0000396854
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NR3C1 (2908)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2908 NR3C1 nuclear receptor subfamily ... NM_000176.3 100% 100%
2 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018074.1 100% 100%
3 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018075.1 100% 100%
4 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018076.2 100% 100%
5 human 2908 NR3C1 nuclear receptor subfamily ... NM_001018077.1 100% 100%
6 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364180.2 100% 100%
7 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364181.2 100% 100%
8 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364182.1 100% 100%
9 human 2908 NR3C1 nuclear receptor subfamily ... NM_001024094.2 99.8% 99.8% 1352_1354delGTA
10 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364183.2 99.8% 99.8% 1352_1354delGTA
11 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364184.2 99.8% 99.8% 1352_1354delGTA
12 human 2908 NR3C1 nuclear receptor subfamily ... NM_001364185.1 99.8% 99.8% 1352_1354delGTA
13 human 2908 NR3C1 nuclear receptor subfamily ... XM_005268422.3 99.8% 99.8% 1352_1354delGTA
14 human 2908 NR3C1 nuclear receptor subfamily ... XM_005268423.3 99.8% 99.8% 1352_1354delGTA
15 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204258.2 96.6% 96.6% 0_1ins78
16 human 2908 NR3C1 nuclear receptor subfamily ... NM_001020825.2 94.8% 92.7% (many diffs)
17 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204259.2 89% 89% 0_1ins255
18 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204260.2 88.5% 88.5% 0_1ins267
19 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204261.2 87.5% 87.5% 0_1ins291
20 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204265.2 86.9% 86.7% 2023delG;2026_2027insCCTAA;2028_2029ins299
21 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204262.2 59.4% 59.4% 0_1ins945
22 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204263.2 57.5% 57.5% 0_1ins990
23 human 2908 NR3C1 nuclear receptor subfamily ... NM_001204264.2 56.8% 56.8% 0_1ins1005
24 human 2908 NR3C1 nuclear receptor subfamily ... XM_011537637.3 48.9% 48.9% 0_1ins1191
25 human 2908 NR3C1 nuclear receptor subfamily ... NR_157096.2 19.3% (many diffs)
26 mouse 14815 Nr3c1 nuclear receptor subfamily ... NM_008173.3 87.3% 88.3% (many diffs)
27 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525666.3 87.3% 88.3% (many diffs)
28 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317835.1 87.3% 88.3% (many diffs)
29 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317836.1 87.3% 88.3% (many diffs)
30 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317837.1 87.3% 88.3% (many diffs)
31 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_017317838.1 87.3% 88.3% (many diffs)
32 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525658.1 87.2% 88.1% (many diffs)
33 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525659.3 87.2% 88.1% (many diffs)
34 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525660.2 87.2% 88.1% (many diffs)
35 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525661.2 87.2% 88.1% (many diffs)
36 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525662.1 87.2% 88.1% (many diffs)
37 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525663.3 87.2% 88.1% (many diffs)
38 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525664.1 87.2% 88.1% (many diffs)
39 mouse 14815 Nr3c1 nuclear receptor subfamily ... XM_006525665.3 87.2% 88.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2397
ORF length:
2331
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CTCCAAAGAA TCATTAACTC CTGGTAGAGA AGAAAACCCC AGCAGTGTGC
121TTGCTCAGGA GAGGGGAGAT GTGATGGACT TCTATAAAAC CCTAAGAGGA GGAGCTACTG
181TGAAGGTTTC TGCGTCTTCA CCCTCACTGG CTGTCGCTTC TCAATCAGAC TCCAAGCAGC
241GAAGACTTTT GGTTGATTTT CCAAAAGGCT CAGTAAGCAA TGCGCAGCAG CCAGATCTGT
301CCAAAGCAGT TTCACTCTCA ATGGGACTGT ATATGGGAGA GACAGAAACA AAAGTGATGG
361GAAATGACCT GGGATTCCCA CAGCAGGGCC AAATCAGCCT TTCCTCGGGG GAAACAGACT
421TAAAGCTTTT GGAAGAAAGC ATTGCAAACC TCAATAGGTC GACCAGTGTT CCAGAGAACC
481CCAAGAGTTC AGCATCCACT GCTGTGTCTG CTGCCCCCAC AGAGAAGGAG TTTCCAAAAA
541CTCACTCTGA TGTATCTTCA GAACAGCAAC ATTTGAAGGG CCAGACTGGC ACCAACGGTG
601GCAATGTGAA ATTGTATACC ACAGACCAAA GCACCTTTGA CATTTTGCAG GATTTGGAGT
661TTTCTTCTGG GTCCCCAGGT AAAGAGACGA ATGAGAGTCC TTGGAGATCA GACCTGTTGA
721TAGATGAAAA CTGTTTGCTT TCTCCTCTGG CGGGAGAAGA CGATTCATTC CTTTTGGAAG
781GAAACTCGAA TGAGGACTGC AAGCCTCTCA TTTTACCGGA CACTAAACCC AAAATTAAGG
841ATAATGGAGA TCTGGTTTTG TCAAGCCCCA GTAATGTAAC ACTGCCCCAA GTGAAAACAG
901AAAAAGAAGA TTTCATCGAA CTCTGCACCC CTGGGGTAAT TAAGCAAGAG AAACTGGGCA
961CAGTTTACTG TCAGGCAAGC TTTCCTGGAG CAAATATAAT TGGTAATAAA ATGTCTGCCA
1021TTTCTGTTCA TGGTGTGAGT ACCTCTGGAG GACAGATGTA CCACTATGAC ATGAATACAG
1081CATCCCTTTC TCAACAGCAG GATCAGAAGC CTATTTTTAA TGTCATTCCA CCAATTCCCG
1141TTGGTTCCGA AAATTGGAAT AGGTGCCAAG GATCTGGAGA TGACAACTTG ACTTCTCTGG
1201GGACTCTGAA CTTCCCTGGT CGAACAGTTT TTTCTAATGG CTATTCAAGC CCCAGCATGA
1261GACCAGATGT AAGCTCTCCT CCATCCAGCT CCTCAACAGC AACAACAGGA CCACCTCCCA
1321AACTCTGCCT GGTGTGCTCT GATGAAGCTT CAGGATGTCA TTATGGAGTC TTAACTTGTG
1381GAAGCTGTAA AGTTTTCTTC AAAAGAGCAG TGGAAGGACA GCACAATTAC CTATGTGCTG
1441GAAGGAATGA TTGCATCATC GATAAAATTC GAAGAAAAAA CTGCCCAGCA TGCCGCTATC
1501GAAAATGTCT TCAGGCTGGA ATGAACCTGG AAGCTCGAAA AACAAAGAAA AAAATAAAAG
1561GAATTCAGCA GGCCACTACA GGAGTCTCAC AAGAAACCTC TGAAAATCCT GGTAACAAAA
1621CAATAGTTCC TGCAACGTTA CCACAACTCA CCCCTACCCT GGTGTCACTG TTGGAGGTTA
1681TTGAACCTGA AGTGTTATAT GCAGGATATG ATAGCTCTGT TCCAGACTCA ACTTGGAGGA
1741TCATGACTAC GCTCAACATG TTAGGAGGGC GGCAAGTGAT TGCAGCAGTG AAATGGGCAA
1801AGGCAATACC AGGTTTCAGG AACTTACACC TGGATGACCA AATGACCCTA CTGCAGTACT
1861CCTGGATGTT TCTTATGGCA TTTGCTCTGG GGTGGAGATC ATATAGACAA TCAAGTGCAA
1921ACCTGCTGTG TTTTGCTCCT GATCTGATTA TTAATGAGCA GAGAATGACT CTACCCTGCA
1981TGTACGACCA ATGTAAACAC ATGCTGTATG TTTCCTCTGA GTTACACAGG CTTCAGGTAT
2041CTTATGAAGA GTATCTCTGT ATGAAAACCT TACTGCTTCT CTCTTCAGTT CCTAAGGACG
2101GTCTGAAGAG CCAAGAGCTA TTTGATGAAA TTAGAATGAC CTACATCAAA GAGCTAGGAA
2161AAGCCATTGT CAAGAGGGAA GGAAACTCCA GCCAGAACTG GCAGCGGTTT TATCAACTGA
2221CAAAACTCTT GGATTCTATG CATGAAGTGG TTGAAAATCT CCTTAACTAT TGCTTCCAAA
2281CATTTTTGGA TAAGACCATG AGTATTGAAT TCCCCGAGAT GTTAGCTGAA ATCATCACCA
2341ATCAGATACC AAAATATTCA AATGGAAATA TCAAAAAACT TCTGTTTCAT CAAAAGTGCC
2401CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
2461aac

Download FASTA (ORF) (Full)