Construct: ORF ccsbBroadEn_00693
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000715.1_s300c1, BRDN0000396854
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NR3C1 (2908)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_000176.3 | 100% | 100% | |
| 2 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001018074.1 | 100% | 100% | |
| 3 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001018075.1 | 100% | 100% | |
| 4 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001018076.2 | 100% | 100% | |
| 5 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001018077.1 | 100% | 100% | |
| 6 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001364180.2 | 100% | 100% | |
| 7 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001364181.2 | 100% | 100% | |
| 8 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001364182.1 | 100% | 100% | |
| 9 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001024094.2 | 99.8% | 99.8% | 1352_1354delGTA |
| 10 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001364183.2 | 99.8% | 99.8% | 1352_1354delGTA |
| 11 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001364184.2 | 99.8% | 99.8% | 1352_1354delGTA |
| 12 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001364185.1 | 99.8% | 99.8% | 1352_1354delGTA |
| 13 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | XM_005268422.3 | 99.8% | 99.8% | 1352_1354delGTA |
| 14 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | XM_005268423.3 | 99.8% | 99.8% | 1352_1354delGTA |
| 15 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204258.2 | 96.6% | 96.6% | 0_1ins78 |
| 16 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001020825.2 | 94.8% | 92.7% | (many diffs) |
| 17 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204259.2 | 89% | 89% | 0_1ins255 |
| 18 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204260.2 | 88.5% | 88.5% | 0_1ins267 |
| 19 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204261.2 | 87.5% | 87.5% | 0_1ins291 |
| 20 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204265.2 | 86.9% | 86.7% | 2023delG;2026_2027insCCTAA;2028_2029ins299 |
| 21 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204262.2 | 59.4% | 59.4% | 0_1ins945 |
| 22 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204263.2 | 57.5% | 57.5% | 0_1ins990 |
| 23 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NM_001204264.2 | 56.8% | 56.8% | 0_1ins1005 |
| 24 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | XM_011537637.3 | 48.9% | 48.9% | 0_1ins1191 |
| 25 | human | 2908 | NR3C1 | nuclear receptor subfamily ... | NR_157096.2 | 19.3% | (many diffs) | |
| 26 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | NM_008173.3 | 87.3% | 88.3% | (many diffs) |
| 27 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525666.3 | 87.3% | 88.3% | (many diffs) |
| 28 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_017317835.1 | 87.3% | 88.3% | (many diffs) |
| 29 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_017317836.1 | 87.3% | 88.3% | (many diffs) |
| 30 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_017317837.1 | 87.3% | 88.3% | (many diffs) |
| 31 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_017317838.1 | 87.3% | 88.3% | (many diffs) |
| 32 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525658.1 | 87.2% | 88.1% | (many diffs) |
| 33 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525659.3 | 87.2% | 88.1% | (many diffs) |
| 34 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525660.2 | 87.2% | 88.1% | (many diffs) |
| 35 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525661.2 | 87.2% | 88.1% | (many diffs) |
| 36 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525662.1 | 87.2% | 88.1% | (many diffs) |
| 37 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525663.3 | 87.2% | 88.1% | (many diffs) |
| 38 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525664.1 | 87.2% | 88.1% | (many diffs) |
| 39 | mouse | 14815 | Nr3c1 | nuclear receptor subfamily ... | XM_006525665.3 | 87.2% | 88.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2397
- ORF length:
- 2331
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CTCCAAAGAA TCATTAACTC CTGGTAGAGA AGAAAACCCC AGCAGTGTGC 121 TTGCTCAGGA GAGGGGAGAT GTGATGGACT TCTATAAAAC CCTAAGAGGA GGAGCTACTG 181 TGAAGGTTTC TGCGTCTTCA CCCTCACTGG CTGTCGCTTC TCAATCAGAC TCCAAGCAGC 241 GAAGACTTTT GGTTGATTTT CCAAAAGGCT CAGTAAGCAA TGCGCAGCAG CCAGATCTGT 301 CCAAAGCAGT TTCACTCTCA ATGGGACTGT ATATGGGAGA GACAGAAACA AAAGTGATGG 361 GAAATGACCT GGGATTCCCA CAGCAGGGCC AAATCAGCCT TTCCTCGGGG GAAACAGACT 421 TAAAGCTTTT GGAAGAAAGC ATTGCAAACC TCAATAGGTC GACCAGTGTT CCAGAGAACC 481 CCAAGAGTTC AGCATCCACT GCTGTGTCTG CTGCCCCCAC AGAGAAGGAG TTTCCAAAAA 541 CTCACTCTGA TGTATCTTCA GAACAGCAAC ATTTGAAGGG CCAGACTGGC ACCAACGGTG 601 GCAATGTGAA ATTGTATACC ACAGACCAAA GCACCTTTGA CATTTTGCAG GATTTGGAGT 661 TTTCTTCTGG GTCCCCAGGT AAAGAGACGA ATGAGAGTCC TTGGAGATCA GACCTGTTGA 721 TAGATGAAAA CTGTTTGCTT TCTCCTCTGG CGGGAGAAGA CGATTCATTC CTTTTGGAAG 781 GAAACTCGAA TGAGGACTGC AAGCCTCTCA TTTTACCGGA CACTAAACCC AAAATTAAGG 841 ATAATGGAGA TCTGGTTTTG TCAAGCCCCA GTAATGTAAC ACTGCCCCAA GTGAAAACAG 901 AAAAAGAAGA TTTCATCGAA CTCTGCACCC CTGGGGTAAT TAAGCAAGAG AAACTGGGCA 961 CAGTTTACTG TCAGGCAAGC TTTCCTGGAG CAAATATAAT TGGTAATAAA ATGTCTGCCA 1021 TTTCTGTTCA TGGTGTGAGT ACCTCTGGAG GACAGATGTA CCACTATGAC ATGAATACAG 1081 CATCCCTTTC TCAACAGCAG GATCAGAAGC CTATTTTTAA TGTCATTCCA CCAATTCCCG 1141 TTGGTTCCGA AAATTGGAAT AGGTGCCAAG GATCTGGAGA TGACAACTTG ACTTCTCTGG 1201 GGACTCTGAA CTTCCCTGGT CGAACAGTTT TTTCTAATGG CTATTCAAGC CCCAGCATGA 1261 GACCAGATGT AAGCTCTCCT CCATCCAGCT CCTCAACAGC AACAACAGGA CCACCTCCCA 1321 AACTCTGCCT GGTGTGCTCT GATGAAGCTT CAGGATGTCA TTATGGAGTC TTAACTTGTG 1381 GAAGCTGTAA AGTTTTCTTC AAAAGAGCAG TGGAAGGACA GCACAATTAC CTATGTGCTG 1441 GAAGGAATGA TTGCATCATC GATAAAATTC GAAGAAAAAA CTGCCCAGCA TGCCGCTATC 1501 GAAAATGTCT TCAGGCTGGA ATGAACCTGG AAGCTCGAAA AACAAAGAAA AAAATAAAAG 1561 GAATTCAGCA GGCCACTACA GGAGTCTCAC AAGAAACCTC TGAAAATCCT GGTAACAAAA 1621 CAATAGTTCC TGCAACGTTA CCACAACTCA CCCCTACCCT GGTGTCACTG TTGGAGGTTA 1681 TTGAACCTGA AGTGTTATAT GCAGGATATG ATAGCTCTGT TCCAGACTCA ACTTGGAGGA 1741 TCATGACTAC GCTCAACATG TTAGGAGGGC GGCAAGTGAT TGCAGCAGTG AAATGGGCAA 1801 AGGCAATACC AGGTTTCAGG AACTTACACC TGGATGACCA AATGACCCTA CTGCAGTACT 1861 CCTGGATGTT TCTTATGGCA TTTGCTCTGG GGTGGAGATC ATATAGACAA TCAAGTGCAA 1921 ACCTGCTGTG TTTTGCTCCT GATCTGATTA TTAATGAGCA GAGAATGACT CTACCCTGCA 1981 TGTACGACCA ATGTAAACAC ATGCTGTATG TTTCCTCTGA GTTACACAGG CTTCAGGTAT 2041 CTTATGAAGA GTATCTCTGT ATGAAAACCT TACTGCTTCT CTCTTCAGTT CCTAAGGACG 2101 GTCTGAAGAG CCAAGAGCTA TTTGATGAAA TTAGAATGAC CTACATCAAA GAGCTAGGAA 2161 AAGCCATTGT CAAGAGGGAA GGAAACTCCA GCCAGAACTG GCAGCGGTTT TATCAACTGA 2221 CAAAACTCTT GGATTCTATG CATGAAGTGG TTGAAAATCT CCTTAACTAT TGCTTCCAAA 2281 CATTTTTGGA TAAGACCATG AGTATTGAAT TCCCCGAGAT GTTAGCTGAA ATCATCACCA 2341 ATCAGATACC AAAATATTCA AATGGAAATA TCAAAAAACT TCTGTTTCAT CAAAAGTGCC 2401 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2461 aac