Construct: ORF ccsbBroadEn_00911
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005003.1_s300c1, BRDN0000388125
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KLRD1 (3824)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 3824 | KLRD1 | killer cell lectin like rec... | NM_001114396.2 | 99.8% | 99.4% | 73T>G |
| 2 | human | 3824 | KLRD1 | killer cell lectin like rec... | NM_001351062.1 | 99.8% | 99.4% | 73T>G |
| 3 | human | 3824 | KLRD1 | killer cell lectin like rec... | NM_002262.5 | 99.8% | 99.4% | 73T>G |
| 4 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_011520651.3 | 94.1% | 92.5% | (many diffs) |
| 5 | human | 3824 | KLRD1 | killer cell lectin like rec... | NM_001351060.1 | 93.6% | 94% | (many diffs) |
| 6 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_006719067.4 | 93.6% | 94% | (many diffs) |
| 7 | human | 3824 | KLRD1 | killer cell lectin like rec... | NM_001351063.2 | 88% | 87.1% | 73T>G;100_101ins63 |
| 8 | human | 3824 | KLRD1 | killer cell lectin like rec... | NM_007334.2 | 82.3% | 81% | 0_1ins69;6_7delAGins26 |
| 9 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_017019287.1 | 80.9% | 78.9% | (many diffs) |
| 10 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_011520650.2 | 80.6% | 78.6% | (many diffs) |
| 11 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_017019285.2 | 80.6% | 78.6% | (many diffs) |
| 12 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_017019286.1 | 80.6% | 78.6% | (many diffs) |
| 13 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_024448974.1 | 80.6% | 78.6% | (many diffs) |
| 14 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_017019289.2 | 66.6% | 63.9% | (many diffs) |
| 15 | human | 3824 | KLRD1 | killer cell lectin like rec... | XM_017019288.2 | 66.3% | 63.6% | (many diffs) |
| 16 | human | 3824 | KLRD1 | killer cell lectin like rec... | XR_001748697.2 | 18% | (many diffs) | |
| 17 | human | 3824 | KLRD1 | killer cell lectin like rec... | XR_001748696.2 | 16.9% | (many diffs) | |
| 18 | human | 3824 | KLRD1 | killer cell lectin like rec... | NR_147038.2 | 3.4% | (many diffs) | |
| 19 | human | 3824 | KLRD1 | killer cell lectin like rec... | NR_147039.2 | 3.1% | (many diffs) | |
| 20 | human | 3824 | KLRD1 | killer cell lectin like rec... | NR_147040.2 | 2.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 603
- ORF length:
- 537
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGTGTTTAAG ACCACTCTGT GGAGGTTAAT TTCTGGGACC TTAGGGATAA 121 TATGCCTTTC GTTGATGGCT ACGTTGGGAA TTTTGTTGAA AAATTCTTTT ACTAAACTGA 181 GTATTGAGCC AGCATTTACT CCAGGACCCA ACATAGAACT CCAGAAAGAC TCTGACTGCT 241 GTTCTTGCCA AGAAAAATGG GTTGGGTACC GGTGCAACTG TTACTTCATT TCCAGTGAAC 301 AGAAAACTTG GAACGAAAGT CGGCATCTCT GTGCTTCTCA GAAATCCAGC CTGCTTCAGC 361 TTCAAAACAC AGATGAACTG GATTTTATGA GCTCCAGTCA ACAATTTTAC TGGATTGGAC 421 TCTCTTACAG TGAGGAGCAC ACCGCCTGGT TGTGGGAGAA TGGCTCTGCA CTCTCCCAGT 481 ATCTATTTCC ATCATTTGAA ACTTTTAATA CAAAGAACTG CATAGCGTAT AATCCAAATG 541 GAAATGCTTT AGATGAATCC TGTGAAGATA AAAATCGTTA TATCTGTAAG CAACAGCTCA 601 TTTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 661 gcaacgaac