Construct: ORF ccsbBroadEn_01375

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015817.1_s300c1, BRDN0000389629
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RARA (5914)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5914 RARA retinoic acid receptor alpha NM_000964.4 100% 100%
2 human 5914 RARA retinoic acid receptor alpha NM_001145301.3 100% 100%
3 human 5914 RARA retinoic acid receptor alpha XM_005257553.1 100% 100%
4 human 5914 RARA retinoic acid receptor alpha XM_005257554.1 100% 100%
5 human 5914 RARA retinoic acid receptor alpha XM_011525095.1 100% 100%
6 human 5914 RARA retinoic acid receptor alpha NM_001024809.4 91% 86% (many diffs)
7 human 5914 RARA retinoic acid receptor alpha XM_005257552.5 90.3% 86.3% (many diffs)
8 human 5914 RARA retinoic acid receptor alpha XM_011525096.1 87.3% 87% 0_1ins167;3G>C;4_5insCCAGCCA
9 human 5914 RARA retinoic acid receptor alpha NM_001145302.3 79% 79% 178_179ins291
10 human 5914 RARA retinoic acid receptor alpha XM_017024920.2 74.2% 74.2% 0_1ins357
11 mouse 19401 Rara retinoic acid receptor, alpha NM_001177302.1 91.5% 98.2% (many diffs)
12 mouse 19401 Rara retinoic acid receptor, alpha NM_001177303.1 91.5% 98.2% (many diffs)
13 mouse 19401 Rara retinoic acid receptor, alpha NM_009024.2 91.5% 98.2% (many diffs)
14 mouse 19401 Rara retinoic acid receptor, alpha XM_006532592.3 91.5% 98.2% (many diffs)
15 mouse 19401 Rara retinoic acid receptor, alpha XM_006532593.2 91.5% 98.2% (many diffs)
16 mouse 19401 Rara retinoic acid receptor, alpha XM_017314353.1 91.5% 98.2% (many diffs)
17 mouse 19401 Rara retinoic acid receptor, alpha NM_001176528.1 83.7% 84.5% (many diffs)
18 mouse 19401 Rara retinoic acid receptor, alpha XM_006532596.2 68% 72.7% (many diffs)
19 mouse 19401 Rara retinoic acid receptor, alpha XM_006532597.2 68% 72.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1452
ORF length:
1386
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGCAACAGC AGCTCCTGCC CGACACCTGG GGGCGGGCAC CTCAATGGGT
121ACCCGGTGCC TCCCTACGCC TTCTTCTTCC CCCCTATGCT GGGTGGACTC TCCCCGCCAG
181GCGCTCTGAC CACTCTCCAG CACCAGCTTC CAGTTAGTGG ATATAGCACA CCATCCCCAG
241CCACCATTGA GACCCAGAGC AGCAGTTCTG AAGAGATAGT GCCCAGCCCT CCCTCGCCAC
301CCCCTCTACC CCGCATCTAC AAGCCTTGCT TTGTCTGTCA GGACAAGTCC TCAGGCTACC
361ACTATGGGGT CAGCGCCTGT GAGGGCTGCA AGGGCTTCTT CCGCCGCAGC ATCCAGAAGA
421ACATGGTGTA CACGTGTCAC CGGGACAAGA ACTGCATCAT CAACAAGGTG ACCCGGAACC
481GCTGCCAGTA CTGCCGACTG CAGAAGTGCT TTGAAGTGGG CATGTCCAAG GAGTCTGTGA
541GAAACGACCG AAACAAGAAG AAGAAGGAGG TGCCCAAGCC CGAGTGCTCT GAGAGCTACA
601CGCTGACGCC GGAGGTGGGG GAGCTCATTG AGAAGGTGCG CAAAGCGCAC CAGGAAACCT
661TCCCTGCCCT CTGCCAGCTG GGCAAATACA CTACGAACAA CAGCTCAGAA CAACGTGTCT
721CTCTGGACAT TGACCTCTGG GACAAGTTCA GTGAACTCTC CACCAAGTGC ATCATTAAGA
781CTGTGGAGTT CGCCAAGCAG CTGCCCGGCT TCACCACCCT CACCATCGCC GACCAGATCA
841CCCTCCTCAA GGCTGCCTGC CTGGACATCC TGATCCTGCG GATCTGCACG CGGTACACGC
901CCGAGCAGGA CACCATGACC TTCTCGGACG GGCTGACCCT GAACCGGACC CAGATGCACA
961ACGCTGGCTT CGGCCCCCTC ACCGACCTGG TCTTTGCCTT CGCCAACCAG CTGCTGCCCC
1021TGGAGATGGA TGATGCGGAG ACGGGGCTGC TCAGCGCCAT CTGCCTCATC TGCGGAGACC
1081GCCAGGACCT GGAGCAGCCG GACCGGGTGG ACATGCTGCA GGAGCCGCTG CTGGAGGCGC
1141TAAAGGTCTA CGTGCGGAAG CGGAGGCCCA GCCGCCCCCA CATGTTCCCC AAGATGCTAA
1201TGAAGATTAC TGACCTGCGA AGCATCAGCG CCAAGGGGGC TGAGCGGGTG ATCACGCTGA
1261AGATGGAGAT CCCGGGCTCC ATGCCGCCTC TCATCCAGGA AATGTTGGAG AACTCAGAGG
1321GCCTGGACAC TCTGAGCGGA CAGCCGGGGG GTGGGGGGCG GGACGGGGGT GGCCTGGCCC
1381CCCCGCCAGG CAGCTGTAGC CCCAGCCTCA GCCCCAGCTC CAACAGAAGC AGCCCGGCCA
1441CCCACTCCCC GTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1501caatttgttg caacgaac

Download FASTA (ORF) (Full)