Construct: ORF ccsbBroadEn_01440

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015996.1_s300c1, BRDN0000394240
DNA Barcode:
None
Epitope Tag:
None
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
RPL39 (6170)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6170 RPL39 ribosomal protein L39 NM_001000.4 100% 100%
2 human 116832 RPL39L ribosomal protein L39 like NM_052969.3 94.7% 92.1% (many diffs)
3 human 170958 ZNF525 zinc finger protein 525 NR_145447.2 7.5% (many diffs)
4 human 170958 ZNF525 zinc finger protein 525 NR_145446.2 6.6% (many diffs)
5 human 388558 ZNF808 zinc finger protein 808 XR_935832.3 3.3% (many diffs)
6 human 388558 ZNF808 zinc finger protein 808 XR_002958314.1 3.1% (many diffs)
7 human 170958 ZNF525 zinc finger protein 525 NR_145445.2 2.7% (many diffs)
8 mouse 68172 Rpl39l ribosomal protein L39-like NM_026594.2 91.5% 94.1% (many diffs)
9 mouse 68172 Rpl39l ribosomal protein L39-like XM_006522506.3 91.5% 94.1% (many diffs)
10 mouse 67248 Rpl39 ribosomal protein L39 NM_026055.2 89.5% 100% (many diffs)
11 mouse 102634812 LOC102634812 ribosomal protein L39 pseud... NR_136931.1 7.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
219
ORF length:
153
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaACC
61TCGCCATGTC TTCTCACAAG ACTTTCAGGA TTAAGCGATT CCTGGCCAAG AAACAAAAGC
121AAAATCGTCC CATTCCCCAG TGGATTCGGA TGAAAACTGG AAATAAAATC AGGTACAACT
181CCAAAAGGAG ACATTGGAGA AGAACCAAGC TGGGTCTATA AGGaactttc ttgtacaaag
241ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)