Construct: ORF ccsbBroadEn_01621
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011402.1_s300c1, BRDN0000391572
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SULT1A3 (6818)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 445329 | SULT1A4 | sulfotransferase family 1A ... | NM_001017390.2 | 100% | 100% | |
| 2 | human | 6818 | SULT1A3 | sulfotransferase family 1A ... | NM_177552.3 | 100% | 100% | |
| 3 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_001055.3 | 94.4% | 92.8% | (many diffs) |
| 4 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177529.2 | 94.4% | 92.8% | (many diffs) |
| 5 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177530.2 | 94.4% | 92.8% | (many diffs) |
| 6 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177534.2 | 94.4% | 92.8% | (many diffs) |
| 7 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023611.2 | 94.4% | 92.8% | (many diffs) |
| 8 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023612.2 | 94.4% | 92.8% | (many diffs) |
| 9 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023613.2 | 94.4% | 92.8% | (many diffs) |
| 10 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450409.1 | 94.4% | 92.8% | (many diffs) |
| 11 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450410.1 | 94.4% | 92.8% | (many diffs) |
| 12 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450411.1 | 94.4% | 92.8% | (many diffs) |
| 13 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_177528.2 | 93.5% | 90.5% | (many diffs) |
| 14 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_001054.4 | 93.4% | 90.1% | (many diffs) |
| 15 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023604.1 | 92.5% | 91% | (many diffs) |
| 16 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023605.1 | 92.5% | 91% | (many diffs) |
| 17 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023608.1 | 92.5% | 91% | (many diffs) |
| 18 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023609.1 | 92.5% | 91% | (many diffs) |
| 19 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023610.1 | 92.5% | 91% | (many diffs) |
| 20 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_017023607.2 | 72.1% | 70.9% | (many diffs) |
| 21 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XM_024450408.1 | 72% | 70.8% | (many diffs) |
| 22 | human | 6799 | SULT1A2 | sulfotransferase family 1A ... | NM_001363863.1 | 67.8% | 62.2% | (many diffs) |
| 23 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | NM_177536.3 | 64.6% | 50.7% | (many diffs) |
| 24 | human | 6817 | SULT1A1 | sulfotransferase family 1A ... | XR_001751973.1 | 61.5% | (many diffs) | |
| 25 | human | 100526831 | SLX1B-SULT1A4 | SLX1B-SULT1A4 readthrough (... | NR_037609.1 | 39.9% | 1_921del;1807_2214del | |
| 26 | human | 100526830 | SLX1A-SULT1A3 | SLX1A-SULT1A3 readthrough (... | NR_037608.1 | 39.9% | 1_921del;1807_2218del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 954
- ORF length:
- 885
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGCTGATC CAGGACACCT CCCGCCCGCC ACTGGAGTAC GTGAAGGGGG 121 TCCCGCTCAT CAAGTACTTT GCAGAGGCAC TGGGGCCCCT GCAGAGCTTC CAAGCCCGAC 181 CTGATGACCT GCTCATCAAC ACCTACCCCA AGTCTGGCAC CACCTGGGTG AGCCAGATAC 241 TGGACATGAT CTACCAGGGC GGCGACCTAG AGAAGTGTAA CCGGGCTCCC ATCTACGTAC 301 GGGTGCCCTT CCTTGAGGTC AATGATCCAG GGGAACCCTC AGGGCTGGAG ACTCTGAAAG 361 ACACACCGCC CCCACGGCTC ATCAAGTCAC ACCTGCCCCT GGCTCTGCTC CCTCAGACTC 421 TGTTGGATCA GAAGGTCAAG GTGGTCTATG TTGCCCGAAA CCCAAAGGAC GTGGCGGTCT 481 CCTACTACCA TTTCCACCGT ATGGAAAAGG CGCACCCTGA GCCTGGGACC TGGGACAGCT 541 TCCTGGAAAA GTTCATGGCT GGAGAAGTGT CCTACGGGTC CTGGTACCAG CACGTGCAGG 601 AGTGGTGGGA GCTGAGCCGC ACCCACCCTG TTCTCTACCT CTTCTATGAA GACATGAAGG 661 AGAACCCCAA AAGGGAGATT CAAAAGATCC TGGAGTTTGT GGGGCGCTCC CTGCCAGAGG 721 AGACCATGGA CTTCATGGTT CAGCACACGT CGTTCAAGGA GATGAAGAAG AACCCTATGA 781 CCAACTACAC CACCGTCCCC CAGGAGCTCA TGGACCACAG CATCTCCCCC TTCATGAGGA 841 AAGGCATGGC TGGGGACTGG AAGACCACCT TCACCGTGGC GCAGAATGAG CGCTTCGATG 901 CGGACTATGC GGAGAAGATG GCAGGCTGCA GCCTCAGCTT CCGCTCTGAG CTGTTGCCAA 961 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac