Construct: ORF ccsbBroadEn_01791

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001449.1_s300c1, BRDN0000457126
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZFY (7544)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7544 ZFY zinc finger protein Y-linked NM_001145275.2 100% 100%
2 human 7544 ZFY zinc finger protein Y-linked NM_001369708.1 100% 100%
3 human 7544 ZFY zinc finger protein Y-linked NM_001369706.1 96.5% 96.5% 1_78del
4 human 7544 ZFY zinc finger protein Y-linked NM_001369707.1 96.5% 96.5% 1_78del
5 human 7544 ZFY zinc finger protein Y-linked NM_001369703.1 93.4% 93.2% 851_1003del
6 human 7544 ZFY zinc finger protein Y-linked NM_001369704.1 93.4% 93.2% 851_1003del
7 human 7544 ZFY zinc finger protein Y-linked NM_001369705.1 93.4% 93.2% 851_1003del
8 human 7544 ZFY zinc finger protein Y-linked NM_001369702.1 90.3% 90.2% 1_78del;929_1081del
9 human 7544 ZFY zinc finger protein Y-linked NM_003411.4 90.3% 90.2% 1_78del;929_1081del
10 human 7544 ZFY zinc finger protein Y-linked XM_017030075.1 90.3% 90.2% 1_78del;929_1081del
11 human 7543 ZFX zinc finger protein X-linked XM_017029800.2 88.1% 85.2% (many diffs)
12 human 7543 ZFX zinc finger protein X-linked XM_005274594.5 86.8% 86.9% (many diffs)
13 human 7543 ZFX zinc finger protein X-linked XM_017029797.2 86.8% 86.9% (many diffs)
14 human 7543 ZFX zinc finger protein X-linked XM_017029798.2 86.8% 86.9% (many diffs)
15 human 7543 ZFX zinc finger protein X-linked XM_017029799.1 85.3% 82.4% (many diffs)
16 human 7543 ZFX zinc finger protein X-linked NM_001178084.2 84.1% 84.2% (many diffs)
17 human 7543 ZFX zinc finger protein X-linked NM_001178085.1 84.1% 84.2% (many diffs)
18 human 7543 ZFX zinc finger protein X-linked NM_003410.4 84.1% 84.2% (many diffs)
19 human 7543 ZFX zinc finger protein X-linked XM_005274591.4 84.1% 84.2% (many diffs)
20 human 7543 ZFX zinc finger protein X-linked XM_005274592.3 84.1% 84.2% (many diffs)
21 human 7543 ZFX zinc finger protein X-linked XM_011545579.1 84.1% 84.2% (many diffs)
22 human 7543 ZFX zinc finger protein X-linked XM_011545581.2 84.1% 84.2% (many diffs)
23 human 7543 ZFX zinc finger protein X-linked XM_017029794.1 84.1% 84.2% (many diffs)
24 human 7543 ZFX zinc finger protein X-linked XM_017029795.1 84.1% 84.2% (many diffs)
25 human 7543 ZFX zinc finger protein X-linked XM_011545583.3 83% 83.1% (many diffs)
26 human 7543 ZFX zinc finger protein X-linked XM_017029796.1 81.2% 78.5% (many diffs)
27 human 7543 ZFX zinc finger protein X-linked XM_024452440.1 81.2% 78.5% (many diffs)
28 human 7543 ZFX zinc finger protein X-linked NM_001330327.2 80.2% 80.3% (many diffs)
29 human 7543 ZFX zinc finger protein X-linked XM_006724513.3 80.2% 80.3% (many diffs)
30 human 7543 ZFX zinc finger protein X-linked XM_017029788.1 80.2% 80.3% (many diffs)
31 human 7543 ZFX zinc finger protein X-linked XM_017029789.1 80.2% 80.3% (many diffs)
32 human 7543 ZFX zinc finger protein X-linked XM_017029790.1 80.2% 80.3% (many diffs)
33 human 7543 ZFX zinc finger protein X-linked XM_017029791.2 80.2% 80.3% (many diffs)
34 human 7543 ZFX zinc finger protein X-linked XM_017029792.1 80.2% 80.3% (many diffs)
35 human 7543 ZFX zinc finger protein X-linked XM_017029793.1 80.2% 80.3% (many diffs)
36 human 7544 ZFY zinc finger protein Y-linked NM_001369709.1 76.2% 74% (many diffs)
37 human 7544 ZFY zinc finger protein Y-linked NM_001369710.1 71.4% 71.4% 0_1ins621
38 human 7544 ZFY zinc finger protein Y-linked NM_001145276.2 71.2% 69.1% (many diffs)
39 human 7543 ZFX zinc finger protein X-linked XM_017029801.1 66.3% 67.2% (many diffs)
40 human 7543 ZFX zinc finger protein X-linked NM_001178086.1 64.3% 65.4% (many diffs)
41 human 7543 ZFX zinc finger protein X-linked NM_001178095.2 39% 36.8% (many diffs)
42 mouse 22764 Zfx zinc finger protein X-linked NM_001044386.1 81.2% 83.3% (many diffs)
43 mouse 22764 Zfx zinc finger protein X-linked NM_011768.2 81.2% 83.3% (many diffs)
44 mouse 22764 Zfx zinc finger protein X-linked XM_006527966.3 81.2% 83.3% (many diffs)
45 mouse 22764 Zfx zinc finger protein X-linked XM_011247577.2 81.2% 83.3% (many diffs)
46 mouse 22764 Zfx zinc finger protein X-linked XM_011247578.2 81.2% 83.3% (many diffs)
47 mouse 22764 Zfx zinc finger protein X-linked XM_006527965.3 78% 80% (many diffs)
48 mouse 22764 Zfx zinc finger protein X-linked XM_017318464.1 75.6% 78% (many diffs)
49 mouse 22764 Zfx zinc finger protein X-linked XM_017318465.1 75.6% 78% (many diffs)
50 mouse 22764 Zfx zinc finger protein X-linked XM_017318466.1 75.6% 78% (many diffs)
51 mouse 22764 Zfx zinc finger protein X-linked XM_006527967.3 72.6% 74.9% (many diffs)
52 mouse 22639 Zfa-ps zinc finger protein, autoso... NR_037920.1 50.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2241
ORF length:
2172
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGATGGTGAT CAGATTGTTG TGGAAATACA AGAAGCAGTT TTTGTTTCTA
121ATATTGTGGA TTCTGACATA ACTGTGCATA ACTTTGTTCC TGATGACCCA GACTCAGTTG
181TAATCCAAGA TGTTGTTGAA GATGTTGTCA TAGAGGAGGA TGTTCAGTGC TCAGATATCT
241TAGAAGAGGC AGATGTATCT GAAAATGTCA TCATTCCTGA GCAAGTGCTG GACTCAGATG
301TAACTGAAGA AGTTTCTTTA CCACACTGCA CAGTCCCAGA TGATGTTTTA GCTTCTGACA
361TTACTTCAAC CTCAATGTCT ATGCCAGAAC ATGTTTTAAC GAGTGAATCC ATGCATGTGT
421GTGACATTGG ACATGTTGAA CATATGGTGC ATGATAGTGT AGTGGAAGCA GAAATCATTA
481CTGATCCTCT GACGAGTGAC ATAGTTTCAG AAGAAGTATT GGTAGCAGAC TGTGCCCCTG
541AAGCAGTCAT AGATGCCAGC GGGATCTCAG TGGACCAGCA AGATAATGAC AAAGCCAGCT
601GTGAGGACTA CCTAATGATT TCGTTGGATG ATGCTGGCAA AATAGAACAT GATGGTTCCA
661CTGGAGTGAC CATCGATGCA GAATCAGAAA TGGATCCTTG TAAAGTGGAT AGCACTTGTC
721CTGAAGTCAT CAAGGTGTAC ATTTTTAAAG CTGACCCTGG AGAAGATGAC TTAGGTGGAA
781CTGTAGACAT TGTGGAGAGT GAACCTGAAA ATGATCATGG AGTTGAACTA CTTGATCAGA
841ACAGCAGTAT TCGTGTTCCC AGGGAAAAGA TGGTTTATAT GACTGTCAAT GACTCTCAAC
901AAGAAGATGA AGATTTAAGT AATAATTCTG ATGGAATTGA AAACCGGAAT GGCACTGCAA
961GTGCCCTCTT GCACATAGAT GAGTCTGCTG GCCTTGGCAG ACTGGCTAAA CAGAAACCAA
1021AGAAAAAGAG AAGACCTGAT TCCAGGCAGT ACCAAACAGC AATAATTATT GGCCCTGATG
1081GTCATCCTTT GACTGTCTAT CCTTGCATGA TTTGTGGGAA GAAGTTTAAG TCGAGGGGTT
1141TTTTGAAAAG ACACATGAAA AACCATCCTG AACACCTTGC CAAGAAGAAG TACCACTGTA
1201CTGACTGTGA TTACACTACC AATAAGAAGA TAAGTTTACA TAACCACCTG GAGAGCCACA
1261AGCTGACCAG CAAGGCAGAG AAGGCCATTG AATGTGATGA GTGTGGGAAG CATTTTTCTC
1321ATGCAGGGGC TTTGTTTACT CACAAAATGG TGCATAAGGA AAAAGGGGCC AACAAAATGC
1381ACAAGTGTAA ATTCTGTGAA TATGAGACAG CTGAACAGGG GTTATTGAAT CGCCACCTCT
1441TGGCAGTCCA CAGCAAGAAC TTTCCTCATA TTTGTGTGGA GTGTGGTAAA GGTTTCCGAC
1501ACCCGTCGGA ACTGAGAAAG CACATGCGAA TCCATACCGG CGAGAAGCCA TACCAATGCC
1561AGTACTGTGA ATATAGGTCT GCAGACTCTT CTAACTTGAA AACACATATA AAAACAAAGC
1621ATAGTAAAGA GATGCCATTC AAGTGTGACA TTTGTCTTCT GACTTTCTCA GATACCAAAG
1681AAGTGCAGCA ACATACTCTT GTCCACCAAG AAAGCAAAAC ACATCAGTGT TTGCATTGCG
1741ACCACAAGAG TTCAAACTCA AGTGATTTGA AACGACATGT AATTTCAGTT CATACGAAAG
1801ACTATCCTCA TAAGTGTGAG ATGTGCGAGA AAGGCTTTCA CAGGCCTTCA GAACTTAAGA
1861AACATGTGGC TGTCCACAAA GGTAAAAAAA TGCACCAATG TAGACATTGT GACTTTAAGA
1921TTGCAGACCC ATTTGTTCTA AGTCGCCATA TTCTCTCAGT TCACACAAAG GATCTTCCAT
1981TTAGGTGTAA GAGATGTAGA AAGGGATTTA GGCAACAAAA TGAGCTTAAA AAGCATATGA
2041AGACACACAG TGGCAGGAAA GTATATCAGT GTGAGTACTG TGAGTATAGC ACTACAGATG
2101CCTCAGGCTT TAAACGGCAC GTTATTTCCA TTCATACAAA AGACTATCCT CATCGGTGTG
2161AGTACTGCAA GAAAGGCTTC CGAAGACCTT CAGAAAAGAA CCAGCACATA ATGAGACACC
2221ATAAAGAAGT TGGTCTGCCC TTGCCAACTT TCTTGTACAA AGTTGGcatt ataagaaagc
2281attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)