Construct: ORF ccsbBroadEn_01806
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006499.1_s300c1, BRDN0000456672
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF76 (7629)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7629 | ZNF76 | zinc finger protein 76 | NM_003427.5 | 99.8% | 100% | 1104C>T;1131C>T |
| 2 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011249.2 | 99.8% | 100% | 1104C>T;1131C>T |
| 3 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011248.2 | 97.8% | 86.2% | (many diffs) |
| 4 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_011514849.2 | 95.2% | 92.6% | (many diffs) |
| 5 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_011514850.3 | 95.2% | 92.6% | (many diffs) |
| 6 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_011514846.2 | 93.3% | 79.5% | (many diffs) |
| 7 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_011514847.3 | 93.3% | 79.5% | (many diffs) |
| 8 | human | 7629 | ZNF76 | zinc finger protein 76 | NM_001292032.2 | 90.2% | 90.3% | 1104C>T;1131C>T;1329_1330ins165 |
| 9 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011256.1 | 90.2% | 90.3% | 1104C>T;1131C>T;1329_1330ins165 |
| 10 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011255.1 | 89.1% | 75% | (many diffs) |
| 11 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011252.2 | 88.3% | 77% | (many diffs) |
| 12 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011250.2 | 88.3% | 74.5% | (many diffs) |
| 13 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011253.2 | 85.8% | 83.1% | (many diffs) |
| 14 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011254.1 | 85.8% | 83.1% | (many diffs) |
| 15 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_011514854.2 | 84.8% | 68.4% | (many diffs) |
| 16 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_011514855.2 | 84.8% | 68.4% | (many diffs) |
| 17 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011251.2 | 84.1% | 70.4% | (many diffs) |
| 18 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_011514856.3 | 82.9% | 68.6% | (many diffs) |
| 19 | human | 7629 | ZNF76 | zinc finger protein 76 | XM_017011257.1 | 79.5% | 65.7% | (many diffs) |
| 20 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743623.2 | 75.7% | (many diffs) | |
| 21 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743625.1 | 63.9% | (many diffs) | |
| 22 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_002956304.1 | 60.9% | (many diffs) | |
| 23 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743620.2 | 60.7% | (many diffs) | |
| 24 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743624.2 | 60.7% | (many diffs) | |
| 25 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743626.2 | 60.4% | (many diffs) | |
| 26 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743619.2 | 59.9% | (many diffs) | |
| 27 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743621.2 | 59.9% | (many diffs) | |
| 28 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743629.1 | 57.4% | (many diffs) | |
| 29 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743627.2 | 54.8% | (many diffs) | |
| 30 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743628.1 | 54.8% | (many diffs) | |
| 31 | human | 7629 | ZNF76 | zinc finger protein 76 | XR_001743622.2 | 54.1% | (many diffs) | |
| 32 | mouse | 224656 | Zfp523 | zinc finger protein 523 | NM_172617.3 | 88.7% | 92.1% | (many diffs) |
| 33 | mouse | 224656 | Zfp523 | zinc finger protein 523 | XM_006524092.3 | 88.7% | 92.1% | (many diffs) |
| 34 | mouse | 224656 | Zfp523 | zinc finger protein 523 | XM_017317409.1 | 88.7% | 92.1% | (many diffs) |
| 35 | mouse | 224656 | Zfp523 | zinc finger protein 523 | XR_385316.3 | 49.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1776
- ORF length:
- 1710
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GAGCTTGGGG CTGCACACGG TGACCCTTAG TGATGGGACA ACAGCCTACG 121 TCCAGCAAGC TGTCAAAGGA GAGAAGCTTC TTGAAGGGCA GGTGATCCAG CTCGAGGATG 181 GGACCACCGC ATACATTCAC CAGGTGACGG TACAGAAAGA AGCTCTCTCC TTTGAGGATG 241 GTCAGCCTGT GCAGCTGGAA GATGGCAGCA TGGCTTACAT ACACCGCACA CCCAGAGAAG 301 GCTATGACCC CAGCACCCTG GAAGCCGTCC AACTGGAAGA TGGCTCCACT GCCTACATTC 361 ACCACCCTGT GGCTGTGCCA TCGGAGAGCA CCATCCTGGC CGTACAGACA GAGGTGGGCT 421 TGGAGGACCT GGCAGCAGAG GATGATGAGG GCTTCAGTGC AGACGCAGTG GTGGCCCTGG 481 AGCAGTATGC CAGCAAGGTT CTTCATGACA GCCAGATTCC CCGTAATGGA AAAGGGCAGC 541 AAGTTGGAGA CAGAGCATTC CGCTGTGGCT ACAAGGGCTG TGGGCGTCTC TACACCACCG 601 CTCATCACTT AAAGGTGCAT GAACGAGCTC ATACAGGTGA CCGTCCATAC AGATGTGACT 661 TCCCCAGCTG TGGAAAGGCC TTTGCCACAG GCTATGGACT GAAGAGCCAC GTTCGTACCC 721 ACACTGGTGA GAAACCATAC AAGTGCCCAG AGGAGCTGTG CAGCAAGGCC TTCAAGACCT 781 CAGGAGACCT GCAGAAGCAT GTCCGTACCC ACACTGGTGA ACGCCCGTTC CAGTGCCCTT 841 TTGAGGGCTG TGGCCGCTCC TTCACCACAT CTAACATCCG CAAGGTACAT GTGCGCACCC 901 ACACAGGCGA GAGGCCCTAC ACCTGCCCGG AGCCCCACTG TGGCCGCGGC TTCACCAGCG 961 CCACCAACTA TAAGAATCAC GTGCGCATCC ACACAGGGGA GAAGCCATAC GTTTGCACGG 1021 TGCCAGGCTG CGGGAAACGC TTCACCGAGT ACTCGAGCTT GTATAAGCAC CACGTGGTGC 1081 ACACACACTG CAAGCCCTAC ACCTGCAGCA CCTGCGGCAA GACCTACCGG CAGACCTCCA 1141 CCTTGGCCAT GCACAAGCGC AGTGCCCATG GCGAGCTGGA GGCCACGGAG GAGAGTGAGC 1201 AGGCCCTCTA TGAGCAGCAG CAACTTGAGG CCGCCTCTGC AGCCGAGGAG AGTCCGCCAC 1261 CCAAACGACC CCGGATAGCT TACCTTTCGG AGGTGAAGGA AGAGAGAGAT GACATCCCAG 1321 CCCAGGTGGC GATGGTGACT GAAGAAGATG GGGCCCCCCA GGTGGCTCTG ATCACTCAGG 1381 ATGGTGCCCA GCAGGTCAGC CTGTCCCCGG AAGACCTGCA GGCCCTGGGG AGTGCCATCA 1441 GTATGGTCAC CCAGCACGGC AGCACCACCC TCACCATCCC CAGTCCTGAT GCCGACCTGG 1501 CCACATCTGG CACACATACA GTCACCATGG TCAGCGCCGA TGGCACCCAG ACGCAGCCCG 1561 TCACAATCAT TACCTCTGGG GCTGTGGTGG CTGAGGACTC AAGTGTAGCA TCTCTTCGTC 1621 ATCAACAGGT GGCACTGTTG GCCACAGCCA ACGGAACGCA CATTGCAGTG CAGCTGGAGG 1681 AACAGCAGAC CTTAGAGGAG GCCATCAATG TGGCCACTGC GGCCATGCAG CAAGGGGCTG 1741 TGACCCTGGA GACAACAGTG TCGGAGAGTG GCTGCTGCCC AACTTTCTTG TACAAAGTTG 1801 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac