Construct: ORF ccsbBroadEn_02125

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004716.1_s300c1, BRDN0000385334
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDLIM7 (9260)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9260 PDLIM7 PDZ and LIM domain 7 NM_005451.5 100% 100%
2 human 9260 PDLIM7 PDZ and LIM domain 7 NM_203352.3 92.3% 91.4% (many diffs)
3 human 9260 PDLIM7 PDZ and LIM domain 7 XM_011534698.2 79.6% 72.6% 0_1ins160;118_119ins119
4 human 9260 PDLIM7 PDZ and LIM domain 7 NR_103804.2 71.7% 1_88del;659_857del;1659_1911del
5 human 9260 PDLIM7 PDZ and LIM domain 7 XM_011534699.2 67.6% 67.6% 0_1ins444
6 human 9260 PDLIM7 PDZ and LIM domain 7 NM_213636.2 46.1% 43% (many diffs)
7 mouse 67399 Pdlim7 PDZ and LIM domain 7 NM_001114088.2 88.5% 93.8% (many diffs)
8 mouse 67399 Pdlim7 PDZ and LIM domain 7 XM_006517344.3 82.2% 86.8% (many diffs)
9 mouse 67399 Pdlim7 PDZ and LIM domain 7 XM_006517345.3 60.4% 64.1% (many diffs)
10 mouse 67399 Pdlim7 PDZ and LIM domain 7 XM_006517346.3 60.4% 64.1% (many diffs)
11 mouse 67399 Pdlim7 PDZ and LIM domain 7 XM_011244558.2 60.4% 64.1% (many diffs)
12 mouse 67399 Pdlim7 PDZ and LIM domain 7 XM_011244559.2 60.4% 64.1% (many diffs)
13 mouse 67399 Pdlim7 PDZ and LIM domain 7 NM_001114087.2 40.9% 39.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1437
ORF length:
1371
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TTCCTTCAAA GTAGTGCTGG AGGGGCCAGC ACCTTGGGGC TTCCGGCTGC
121AAGGGGGCAA GGACTTCAAT GTGCCCCTCT CCATTTCCCG GCTCACTCCT GGGGGCAAAG
181CGGCGCAGGC CGGAGTGGCC GTGGGTGACT GGGTGCTGAG CATCGATGGC GAGAATGCGG
241GTAGCCTCAC ACACATCGAA GCTCAGAACA AGATCCGGGC CTGCGGGGAG CGCCTCAGCC
301TGGGCCTCAG CAGGGCCCAG CCGGTTCAGA GCAAACCGCA GAAGGCCTCC GCCCCCGCCG
361CGGACCCTCC GCGGTACACC TTTGCACCCA GCGTCTCCCT CAACAAGACG GCCCGGCCCT
421TTGGGGCGCC CCCGCCCGCT GACAGCGCCC CGCAGCAGAA TGGACAGCCG CTCCGACCGC
481TGGTCCCAGA TGCCAGCAAG CAGCGGCTGA TGGAGAACAC AGAGGACTGG CGGCCGCGGC
541CGGGGACAGG CCAGTCGCGT TCCTTCCGCA TCCTTGCCCA CCTCACAGGC ACCGAGTTCA
601TGCAAGACCC GGATGAGGAG CACCTGAAGA AATCAAGCCA GGTGCCCAGG ACAGAAGCCC
661CAGCCCCAGC CTCATCTACA CCCCAGGAGC CCTGGCCTGG CCCTACCGCC CCCAGCCCTA
721CCAGCCGCCC GCCCTGGGCT GTGGACCCTG CGTTTGCCGA GCGCTATGCC CCGGACAAAA
781CGAGCACAGT GCTGACCCGG CACAGCCAGC CGGCCACGCC CACGCCGCTG CAGAGCCGCA
841CCTCCATTGT GCAGGCAGCT GCCGGAGGGG TGCCAGGAGG GGGCAGCAAC AACGGCAAGA
901CTCCCGTGTG TCACCAGTGC CACAAGGTCA TCCGGGGCCG CTACCTGGTG GCGCTGGGCC
961ACGCGTACCA CCCGGAGGAG TTTGTGTGTA GCCAGTGTGG GAAGGTCCTG GAAGAGGGTG
1021GCTTCTTTGA GGAGAAGGGC GCCATCTTCT GCCCACCATG CTATGACGTG CGCTATGCAC
1081CCAGCTGTGC CAAGTGCAAG AAGAAGATTA CAGGCGAGAT CATGCACGCC CTGAAGATGA
1141CCTGGCACGT GCACTGCTTT ACCTGTGCTG CCTGCAAGAC GCCCATCCGG AACAGGGCCT
1201TCTACATGGA GGAGGGCGTG CCCTATTGCG AGCGAGACTA TGAGAAGATG TTTGGCACGA
1261AATGCCATGG CTGTGACTTC AAGATCGACG CTGGGGACCG CTTCCTGGAG GCCCTGGGCT
1321TCAGCTGGCA TGACACCTGC TTCGTCTGTG CGATATGTCA GATCAACCTG GAAGGAAAGA
1381CCTTCTACTC CAAGAAGGAC AGGCCTCTCT GCAAGAGCCA TGCCTTCTCT CATGTGTGCC
1441CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1501aac

Download FASTA (ORF) (Full)